DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6961 and Alyreffm11

DIOPT Version :10

Sequence 1:NP_573325.1 Gene:CG6961 / 32869 FlyBaseID:FBgn0030959 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001257827.1 Gene:Alyreffm11 / 100861880 MGIID:5434648 Length:264 Species:Mus musculus


Alignment Length:112 Identity:25/112 - (22%)
Similarity:45/112 - (40%) Gaps:30/112 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 IETTTSAATSTTTTTTTTTVPTTTTTAIPCPTGWDGFERPSGPWCLRVYISPGNRAHAFSGCSA- 85
            :.::.||:.|::...:.::||.:.:::.|..|             |.|..|..:.|.|.:..|| 
Mouse    75 LASSVSASASSSAPASASSVPASASSSAPAST-------------LSVPASASSSAPASASVSAS 126

  Fly    86 -------KGGSLSGVQNQAEIDY-----MASSYISLNG--GAGFLWV 118
                   .|||.......:|:.:     |..|  .|:|  .|..||:
Mouse   127 DVQPRRSSGGSTHSDPAHSEVSFEGWHKMWES--GLHGLPSADILWL 171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6961NP_573325.1 RRM_SKAR 366..434 CDD:410082
Alyreffm11NP_001257827.1 hnRNP-R-Q <26..>179 CDD:273732 25/112 (22%)
RRM_THOC4 86..160 CDD:410081 17/88 (19%)
Blue background indicates that the domain is not in the aligned region.

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