DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6961 and Gm4303

DIOPT Version :9

Sequence 1:NP_573325.1 Gene:CG6961 / 32869 FlyBaseID:FBgn0030959 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001160110.1 Gene:Gm4303 / 100043231 MGIID:3782483 Length:289 Species:Mus musculus


Alignment Length:192 Identity:50/192 - (26%)
Similarity:73/192 - (38%) Gaps:34/192 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   285 DTVSTSKLPESLRSRLFVGKRDPHISHGIYANENRRKAVGGGGGSDSDSGTDSDGDAAAPSKNKR 349
            |.:..:|:.:..|.|     .|..:..|......|.....||            .:..||....:
Mouse    14 DIIKLNKMQQGRRDR-----PDSRVKRGTGPKRYRPAFTHGG------------RNRLAPYCRPK 61

  Fly   350 RSPSPL-------SLRTSNTKD-GYRLLVSNLHTNVTTADIRELFSDIGPV------YDARVVRP 400
            :.|...       ..|..|..| |.:|.:||||..|:.|||:.||::.|.:      ||......
Mouse    62 QLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSL 126

  Fly   401 GTAEVIYKSLEHAEKAVDTYHHRQFDDQPMHCVLVNPHSSR--RSVHKASSRTVTTN-SSGV 459
            |||.|.::....|.||:..|:....|.:||:..||.....|  |....:....:|.| .|||
Mouse   127 GTAHVHFERKADALKAMREYNGAPLDGRPMNIHLVTSQIDRQGRPALNSDKGGMTRNPGSGV 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6961NP_573325.1 RRM 256..>443 CDD:223796 44/173 (25%)
RRM_SKAR 366..434 CDD:241125 25/73 (34%)
Gm4303NP_001160110.1 FYTT 6..>59 CDD:284488 11/61 (18%)
RRM <79..>163 CDD:223796 30/83 (36%)
RRM_THOC4 86..160 CDD:241124 25/73 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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