DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18259 and NCL

DIOPT Version :10

Sequence 1:NP_573324.1 Gene:CG18259 / 32866 FlyBaseID:FBgn0030956 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_005372.2 Gene:NCL / 4691 HGNCID:7667 Length:710 Species:Homo sapiens


Alignment Length:564 Identity:97/564 - (17%)
Similarity:168/564 - (29%) Gaps:184/564 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DIDLSLDE---------IIERKRGQRGYRPLDRKFNANFSKPRQLLNKPFFKPSGARGSHSDTPA 57
            |.::|.||         :|.:|:|::          |..:..::::..|..|.:.|      |||
Human    30 DEEMSEDEEDDSSGEEVVIPQKKGKK----------AAATSAKKVVVSPTKKVAVA------TPA 78

  Fly    58 KRTFDARNTIAAKTRAKIADARDLINKSVRDSGIDARQLLLERKKARSAGPILI----------- 111
            |:........||.|.||         |:|    ..|:.:....||..:.|..|:           
Human    79 KKAAVTPGKKAAATPAK---------KTV----TPAKAVTTPGKKGATPGKALVATPGKKGAAIP 130

  Fly   112 ---------------------------------DDEEESFEPSHRARGKGVHIGQFGHRLSMSNH 143
                                             |::|:..||:...........:........:.
Human   131 AKGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDD 195

  Fly   144 ADGTIQAKWDSDDGVVELGNHMLSGLRRTFDPRSHKPGKPFAPRRYIDLDNMQDLEDEEISRTLH 208
            .|.....:.||::..:|.            .|...|......|   :...|:.:.||||..    
Human   196 EDDDDDEEDDSEEEAMET------------TPAKGKKAAKVVP---VKAKNVAEDEDEEED---- 241

  Fly   209 LGQMKQASPRYSIGGLDLNRGDDVEMSMAPLNNKIDNNAFSIYEAARNRIERPSLTNRLVVGRSN 273
                            |.:..||.:      .:..|::.....|......|.|            
Human   242 ----------------DEDEDDDDD------EDDEDDDDEDDEEEEEEEEEEP------------ 272

  Fly   274 TTKEPLERRHRDTASTSKLPESLRSR-----------LFVG-----KRDPHISHGI---YANEN- 318
             .||...:|.::.|.....||:.:.:           ||||     |..|.:..||   :|..: 
Human   273 -VKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDL 336

  Fly   319 ---------RRK--AVGGGGARDSDSGTDSDGDAAAPSKNKRRSPSPLSLRTSNTKDGYRLLVSN 372
                     .||  .|....|.|.:...:..|  .....|:.:...|....:...:|...||..|
Human   337 AVVDVRIGMTRKFGYVDFESAEDLEKALELTG--LKVFGNEIKLEKPKGKDSKKERDARTLLAKN 399

  Fly   373 LHTNVTTADIRELFSDIGPVYDARVV-----RPGTAEVIYKSLEHAEKAVDTYHHRQFDDQPMHC 432
            |...||..:::|:|.|...:   |:|     ..|.|.:.:|:...|||..:.....:.|.:.:..
Human   400 LPYKVTQDELKEVFEDAAEI---RLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISL 461

  Fly   433 VLVNP-------HSSRRSVHKASSRTVTTNSSGVEVDIDALHSV 469
            .....       ...:.|.....|:|:..::.......:.|..|
Human   462 YYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEV 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18259NP_573324.1 RRM_SKAR 366..434 CDD:410082 18/72 (25%)
NCLNP_005372.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..303 56/355 (16%)
8 X 8 AA tandem repeats of X-T-P-X-K-K-X-X 58..135 19/95 (20%)
RRM1_NCL 307..381 CDD:409837 16/75 (21%)
RRM2_NCL 390..465 CDD:409838 19/77 (25%)
RRM3_NCL 485..557 CDD:409839 4/21 (19%)
RRM4_NCL 572..649 CDD:409840
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 640..710
Blue background indicates that the domain is not in the aligned region.

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