DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18259 and rump

DIOPT Version :10

Sequence 1:NP_573324.1 Gene:CG18259 / 32866 FlyBaseID:FBgn0030956 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster


Alignment Length:502 Identity:104/502 - (20%)
Similarity:160/502 - (31%) Gaps:185/502 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDIDLSLD----EIIERKRGQRGYRPLDRKFNANFSKPRQLLNKPFFKPSGARGSHSDTPAK-RT 60
            ||...|::    |...|.||.||.|..|...|.|                ||........|: |:
  Fly     3 MDASNSVESREKERDRRGRGARGSRFTDADGNGN----------------GAGSQGGGVAARDRS 51

  Fly    61 FDARNTIAAKTRAKIA---------DARDLINKSVRDSGIDARQLLL-ERKKARSAGPILIDDEE 115
            .:.||     .|..|:         |.:||..:.|  ..|:..||.. |..|||..|.:...|.|
  Fly    52 RERRN-----CRVYISNIPYDYRWQDLKDLFRRIV--GSIEYVQLFFDESGKARGCGIVEFKDPE 109

  Fly   116 ---ESFEPSHR--------------------------------ARGKGVHIGQFGHRLSMS---- 141
               ::.|..:|                                ..|.||..|..|:.....    
  Fly   110 NVQKALEKMNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGR 174

  Fly   142 NHADGTIQAKWDSDDGVVELGNHMLSGLRRTFDPRSHKPGKPFAPRRYIDLDNMQD--------- 197
            :|.|       |.|.|.....:..||| |..|:..|:            |.:|..:         
  Fly   175 DHMD-------DRDRGFSRRDDDRLSG-RNNFNMMSN------------DYNNSSNYNLYGLSAS 219

  Fly   198 -LEDEEISRTLHLGQMKQASPRYSIGGLDL-------NRGDDVEMSMAPLNNKIDNNAFSIYE-- 252
             ||...||..|| .::..|:..|.:....|       .:...|::|   |:.:.::..|::.|  
  Fly   220 FLESLGISGPLH-NKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLS---LDKEGNSRGFAVIEYD 280

  Fly   253 ------AARNRIERPSLTNRLVVGRSNTTKEPLERRHRDTASTSKLPESLRSRLFVG-------- 303
                  .|.:.::|..|.:|.:..|.:        |..|.....||||.|..   ||        
  Fly   281 HPVEAVQAISMLDRQMLFDRRMTVRLD--------RIPDKNEGIKLPEGLGG---VGIGLGPNGE 334

  Fly   304 -KRDPHISHG----------IYANENRRKAVGGGGARDSDSGTDSD-------------GDAAAP 344
             .||  ::|.          :..|..:...:|..|::.:.|...:.             |:.||.
  Fly   335 PLRD--VAHNLPNGGQSQGQLLGNAQQGSQLGSVGSQPNSSAVSNATTNLLNNLTGVMFGNHAAV 397

  Fly   345 SKNKRRSPSPL------SLRTSNTKDGYRLLVSNLHTNVTTADIREL 385
                  .|||:      ||..:....|..|  :||:.::..|.:..|
  Fly   398 ------QPSPVAPVQKPSLGNNTGSGGLNL--NNLNPSILAAVVGNL 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18259NP_573324.1 RRM_SKAR 366..434 CDD:410082 5/20 (25%)
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 87/438 (20%)
RRM1_hnRNPM_like 58..133 CDD:409819 18/76 (24%)
RRM2_hnRNPM_like 234..307 CDD:409820 13/75 (17%)
RRM_SF 565..629 CDD:473069
Blue background indicates that the domain is not in the aligned region.

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