DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18259 and Tra2b

DIOPT Version :10

Sequence 1:NP_573324.1 Gene:CG18259 / 32866 FlyBaseID:FBgn0030956 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_033212.1 Gene:Tra2b / 20462 MGIID:106016 Length:288 Species:Mus musculus


Alignment Length:218 Identity:49/218 - (22%)
Similarity:77/218 - (35%) Gaps:71/218 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   254 ARNRIERPSLTNRLVVGRSNTTKEPLERRHRD-----TASTSKLPESLRSRLFVGKRD---PHIS 310
            ||:|.:..|..:|   .:|.:..|...|..|.     |.|.|:.....|||.....||   .| |
Mouse    35 ARSRSKEDSRRSR---SKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRH-S 95

  Fly   311 HGIYANENRRKAVGGGGARDSDSGTDSDGDAAAPSKNKRRSPSP--------LSLRTSNTKDGYR 367
            |.......||:.||                       .|.:|.|        |||.|        
Mouse    96 HSHSPMSTRRRHVG-----------------------NRANPDPNCCLGVFGLSLYT-------- 129

  Fly   368 LLVSNLHTNVTTADIRELFSDIGPVYDARVV-------RPGTAEVIYKSLEHAEKAVDTYHHRQF 425
                      |..|:||:||..||:.|..:|       ..|.|.|.:::::.|::|.:..:..:.
Mouse   130 ----------TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 184

  Fly   426 DDQPMH---CVLVNPHSSRRSVH 445
            |.:.:.   .:...||:....::
Mouse   185 DGRRIRVDFSITKRPHTPTPGIY 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18259NP_573324.1 RRM_SKAR 366..434 CDD:410082 16/77 (21%)
Tra2bNP_033212.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..114 25/105 (24%)
RRM_TRA2 117..196 CDD:409798 20/96 (21%)
Linker 193..230 2/15 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 196..225 2/12 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 242..288
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.