DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18259 and Cirbp

DIOPT Version :10

Sequence 1:NP_573324.1 Gene:CG18259 / 32866 FlyBaseID:FBgn0030956 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001366350.1 Gene:Cirbp / 12696 MGIID:893588 Length:176 Species:Mus musculus


Alignment Length:201 Identity:47/201 - (23%)
Similarity:74/201 - (36%) Gaps:41/201 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 SDDGVVELGNHMLSGLRRTFDPRSHKPGKPFAPRRYIDLDNMQDLEDEEISRTLHLGQMKQASPR 218
            ||:|.:.:|     ||  :||.......:.|:  :|..:..:..::|.|..|:            
Mouse     3 SDEGKLFVG-----GL--SFDTNEQALEQVFS--KYGQISEVVVVKDRETQRS------------ 46

  Fly   219 YSIGGLDLNRGDDVEMSMAPLNNK-IDNNAFSIYEAARNRIERP------SLTNRLVVGRSNTTK 276
            ...|.:.....||.:.:|..:|.| :|.....:.:|.::...|.      |...|.......:..
Mouse    47 RGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRSRG 111

  Fly   277 EPLERRHRDTASTSKLPESLRSRLFVGKRDPHISHGIYANENRRKAVG----GGGARDS-DS-GT 335
            ....|...|........|| ||..:.|.||      .||:.::..:.|    ||..||| || |.
Mouse   112 RGFSRGGGDRGYGGGRFES-RSGGYGGSRD------YYASRSQGGSYGYRSSGGSYRDSYDSYGK 169

  Fly   336 DSDGDA 341
            .|..||
Mouse   170 SSSKDA 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18259NP_573324.1 RRM_SKAR 366..434 CDD:410082
CirbpNP_001366350.1 RRM_CIRBP_RBM3 6..85 CDD:409883 19/99 (19%)
Blue background indicates that the domain is not in the aligned region.

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