DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18259 and hnrnpm

DIOPT Version :10

Sequence 1:NP_573324.1 Gene:CG18259 / 32866 FlyBaseID:FBgn0030956 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_004911113.1 Gene:hnrnpm / 100489127 XenbaseID:XB-GENE-993962 Length:744 Species:Xenopus tropicalis


Alignment Length:151 Identity:35/151 - (23%)
Similarity:61/151 - (40%) Gaps:15/151 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   309 ISHGIYANENRRKAVGGGGARDSDSGTDSDGDAAAPSKNKRRSPSPLSLRTS-----NTKDGYRL 368
            |...:.|...........||.:|...|.:.||....::|.:|....:...|:     |.:..||.
 Frog    11 IQRNLNAKPKSEGTTATNGATESSKETQALGDGDQVNQNDKRKEKGMKKTTNRFEPYNPQRRYRA 75

  Fly   369 LVSNLHTNVTTADIRELFSD-IGPV------YDARVVRPGTAEVIYKSLEHAEKAVDTYHHRQFD 426
            .:||:..:|....:::|..: :|.|      .|......|.|.|.:|..:..:|||...:....:
 Frog    76 FISNIPFDVKWQALKDLVKEKVGEVTYVELLMDDEGKSRGCAAVEFKLEDSMKKAVQVLNKHVLN 140

  Fly   427 DQPMHCVLVNP--HSSRRSVH 445
            .:|:. |..:|  ..|||:.|
 Frog   141 GRPLK-VREDPDGERSRRAAH 160

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18259NP_573324.1 RRM_SKAR 366..434 CDD:410082 17/74 (23%)
hnrnpmXP_004911113.1 HnRNP_M_NLS 48..72 CDD:463289 4/23 (17%)
RRM1_hnRNPM 74..149 CDD:410058 17/75 (23%)
PABP-1234 76..>388 CDD:130689 21/86 (24%)
RRM2_hnRNPM_like 245..318 CDD:409820
RRM3_hnRNPM 668..744 CDD:410062
Blue background indicates that the domain is not in the aligned region.

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