DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18259 and Gm4305

DIOPT Version :9

Sequence 1:NP_573324.1 Gene:CG18259 / 32866 FlyBaseID:FBgn0030956 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001160111.1 Gene:Gm4305 / 100043235 MGIID:3782485 Length:289 Species:Mus musculus


Alignment Length:196 Identity:53/196 - (27%)
Similarity:78/196 - (39%) Gaps:31/196 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   286 TASTSKLPESLR-----SRLFVGKRDPHISHGIYANENRRKAVGGGGARDSDSGTDSDGDAAAPS 345
            |....|:..||.     :::..|:||         ..:.|...|.|..|...:.|....:..||.
Mouse     2 TTMADKMDMSLEDIIKLNKMQQGRRD---------RPDSRVKRGTGPKRYRPAFTHGGRNRLAPY 57

  Fly   346 KNKRRSPSPL-------SLRTSNTKD-GYRLLVSNLHTNVTTADIRELFSDIGPV------YDAR 396
            ...::.|...       ..|..|..| |.:|.:||||..|:.|||:.||::.|.:      ||..
Mouse    58 CRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRC 122

  Fly   397 VVRPGTAEVIYKSLEHAEKAVDTYHHRQFDDQPMHCVLVNPHSSR--RSVHKASSRTVTTN-SSG 458
            ....|||.|.::....|.||:..|:....|.:||:..||.....|  |....:....:|.| .||
Mouse   123 GRSLGTAHVHFERKADALKAMREYNGAPLDGRPMNIHLVTSQIDRQGRPALNSDKGGMTRNPGSG 187

  Fly   459 V 459
            |
Mouse   188 V 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18259NP_573324.1 RRM <345..>443 CDD:223796 33/113 (29%)
RRM_SKAR 366..434 CDD:241125 25/73 (34%)
Gm4305NP_001160111.1 FYTT 6..>59 CDD:284488 13/61 (21%)
RRM <79..>163 CDD:223796 30/83 (36%)
RRM_THOC4 86..160 CDD:241124 25/73 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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