DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment phm and CYP78A8

DIOPT Version :9

Sequence 1:NP_001285414.1 Gene:phm / 32857 FlyBaseID:FBgn0004959 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_171627.2 Gene:CYP78A8 / 839233 AraportID:AT1G01190 Length:540 Species:Arabidopsis thaliana


Alignment Length:510 Identity:120/510 - (23%)
Similarity:195/510 - (38%) Gaps:109/510 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 PGPWGLPFLGYLPFLDARAPHKSLQKLAKRYGG--IFELKMGRVPTVVLSDAALVRDFFRRDVMT 112
            |||.|.|.:|.:....:...|:.:..:|:....  :....:|....||....|:.::.....|..
plant    80 PGPRGFPLVGSMSLRSSHVAHQRIASVAEMSNAKRLMAFSLGDTKVVVTCHPAVAKEILNSSVFA 144

  Fly   113 GRAPLYLTHGIM----GGFGIICAQEDIWRHARRETIDWLKALGMTR--RPGELR-ARLERRIAR 170
            .|......:|:|    .||   ......||..||        ||...  .|.::: :..:||:. 
plant   145 DRPVDETAYGLMFNRAMGF---APNGTYWRTLRR--------LGSNHLFNPKQIKQSEDQRRVI- 197

  Fly   171 GVDECVRLFDTEAKKSCA-SEVNPLPALHHSLGNIINDLVFGITYKRDDPDWL---YLQRLQEEG 231
             ..:.|..|....|.:|| .::....:|.:.:|     ||||..|:.:..:.|   .|:.|.|||
plant   198 -ATQMVNAFARNPKSACAVRDLLKTASLCNMMG-----LVFGREYELESNNNLESECLKGLVEEG 256

  Fly   232 VKLIGVSGVVNFLPWLRHLPANVRNIRFLLEGKAKTHAIYDRIVEACGQRLKEKQKVFKELQEQK 296
            ..|:|.....:.||||..|  :.:.|||                 .|.|.:.:...:...:..: 
plant   257 YDLLGTLNWTDHLPWLAGL--DFQQIRF-----------------RCSQLVPKVNLLLSRIIHE- 301

  Fly   297 RLQRQLEKEQLRQSKEADPSQEQSEADEDDEESDEEDTYEPECILEHFLAVRDTDSQLYCDDQLR 361
              ||......|........|::.||:|                    .:||              
plant   302 --QRAATGNFLDMLLSLQGSEKLSESD--------------------MVAV-------------- 330

  Fly   362 HLLADLFGAGVDTSLATLRWFLLYLAREQRCQRRLH-ELLLPLGPSPTLEE--LEPLAYLRACIS 423
              |.::...|.||....:.|.|..:....:.|..:| ||...:|.|.|::|  |..|.||.|.|.
plant   331 --LWEMIFRGTDTVAVLVEWVLARIVMHPKVQLTVHDELDRVVGRSRTVDESDLPSLTYLTAMIK 393

  Fly   424 ETMRIRSVVP------LGIPHGCKENFVVGDYFIKGGSMIVCSEWAIHMDPVAFPEPEEFRPERF 482
            |.:|:....|      |.|     .:..|..|.:..|:..:.:.|||..||..:.:|.||:||||
plant   394 EVLRLHPPGPLLSWARLSI-----TDTSVDGYHVPAGTTAMVNMWAIARDPHVWEDPLEFKPERF 453

  Fly   483 LTADG-----AYQAPPQFIPFSSGYRMCPGEEMARMILTLFTGRILRRFHLELPS 532
            :..:|     .:.:..:..||.||.|:|||:.:....::.:...:|..|.. |||
plant   454 VAKEGEAEFSVFGSDLRLAPFGSGKRVCPGKNLGLTTVSFWVATLLHEFEW-LPS 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
phmNP_001285414.1 p450 49..555 CDD:278495 120/510 (24%)
CYP78A8NP_171627.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X6
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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