DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment phm and C4H

DIOPT Version :9

Sequence 1:NP_001285414.1 Gene:phm / 32857 FlyBaseID:FBgn0004959 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_180607.1 Gene:C4H / 817599 AraportID:AT2G30490 Length:505 Species:Arabidopsis thaliana


Alignment Length:567 Identity:141/567 - (24%)
Similarity:238/567 - (41%) Gaps:124/567 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LSILLVPGALVLV-ILYLCERQCNDLMGAP---PPGPWGLPFLGYLPFLDARAPHKSLQKLAKRY 80
            :.:||:..:|:.| :..:.....:.|.|..   ||||..:|..|....:.....|::|...||::
plant     1 MDLLLLEKSLIAVFVAVILATVISKLRGKKLKLPPGPIPIPIFGNWLQVGDDLNHRNLVDYAKKF 65

  Fly    81 GGIFELKMGRVPTVVLSDAALVR--------DFFRR------DVMTGRAP--LYLTHGIMGGFGI 129
            |.:|.|:||:...||:|...|.:        :|..|      |:.||:..  ::..:|       
plant    66 GDLFLLRMGQRNLVVVSSPDLTKEVLLTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYG------- 123

  Fly   130 ICAQEDIWRHARR-ETIDWL--KALGMTRRPGELRARLERRIARGVDECVRLFDTEAKKSCASEV 191
                 :.||..|| .|:.:.  |.:...|...|..       |..|.|.|:.....|.|..    
plant   124 -----EHWRKMRRIMTVPFFTNKVVQQNREGWEFE-------AASVVEDVKKNPDSATKGI---- 172

  Fly   192 NPLPALHHSLGNIINDLVFGITYKR-----DDPDWLYLQRLQEEGVKL-------IGVSGVVNFL 244
                .|...|..::.:.:|.|.:.|     |||.:|.|:.|..|..:|       .|     :|:
plant   173 ----VLRKRLQLMMYNNMFRIMFDRRFESEDDPLFLRLKALNGERSRLAQSFEYNYG-----DFI 228

  Fly   245 PWLRHLPANVRNIRFLLEGKAK-THAIYDRIVEACGQRLKEKQKVFKELQEQKRLQRQLEKEQLR 308
            |.||.          .|.|..| ...:.||       |:...:|.|.:           |::|:.
plant   229 PILRP----------FLRGYLKICQDVKDR-------RIALFKKYFVD-----------ERKQIA 265

  Fly   309 QSKEADPSQEQSEADEDDEESDEEDTYEPECILEHFLAVRDTDSQLYCDDQLRHLLADLFGAGVD 373
            .||   |:..:.                .:|.::|.|.......  ..:|.:.:::.::..|.::
plant   266 SSK---PTGSEG----------------LKCAIDHILEAEQKGE--INEDNVLYIVENINVAAIE 309

  Fly   374 TSLATLRWFLLYLAREQRCQRRL-HELLLPLGPSPTLEE--LEPLAYLRACISETMRIRSVVPLG 435
            |:|.::.|.:..|......|.:| :||...|||...:.|  |..|.||:|.:.||:|:|..:||.
plant   310 TTLWSIEWGIAELVNHPEIQSKLRNELDTVLGPGVQVTEPDLHKLPYLQAVVKETLRLRMAIPLL 374

  Fly   436 IPHGCKENFVVGDYFIKGGSMIVCSEWAIHMDPVAFPEPEEFRPERFLTADGAYQAPP---QFIP 497
            :||....:..:..|.|...|.|:.:.|.:..:|.::.:|||||||||...:...:|..   :::|
plant   375 VPHMNLHDAKLAGYDIPAESKILVNAWWLANNPNSWKKPEEFRPERFFEEESHVEANGNDFRYVP 439

  Fly   498 FSSGYRMCPGEEMARMILTLFTGRILRRFHLELPSG-TEVDMAGESG 543
            |..|.|.|||..:|..||.:..||:::.|.|..|.| ::||.:.:.|
plant   440 FGVGRRSCPGIILALPILGITIGRMVQNFELLPPPGQSKVDTSEKGG 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
phmNP_001285414.1 p450 49..555 CDD:278495 135/534 (25%)
C4HNP_180607.1 PLN02394 3..505 CDD:215221 141/565 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000008
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X6
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.000

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