DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment phm and Cyp2j4

DIOPT Version :9

Sequence 1:NP_001285414.1 Gene:phm / 32857 FlyBaseID:FBgn0004959 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_075414.2 Gene:Cyp2j4 / 65210 RGDID:620007 Length:501 Species:Rattus norvegicus


Alignment Length:553 Identity:143/553 - (25%)
Similarity:253/553 - (45%) Gaps:94/553 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LSILLVPGALVLVIL--YLCERQCNDLMGAPPPGPWGLPFLGYLPFLDARAPHKSLQKLAKRYGG 82
            |..||| .||..::|  |...|:..:.    |||||||||:|.:..||...||.|:|...|:||.
  Rat    18 LRTLLV-AALTFLLLADYFKTRRPKNY----PPGPWGLPFVGNIFQLDFGQPHLSIQPFVKKYGN 77

  Fly    83 IFELKMGRVPTVVLSDAALVRDFF---RRDVMTGRAPL-YLTHGIMGGFGIICAQEDIWRHARRE 143
            ||.|.:|.:.:||::...|:::.|   .::::  ..|| .:...|....|:|.:....|:..||.
  Rat    78 IFSLNLGDITSVVITGLPLIKETFTHIEQNIL--NRPLSVMQERITNKNGLIFSSGQTWKEQRRF 140

  Fly   144 TIDWLKALGMTRRPGELRARLERRIARGVDECVRLFDTEAKKSCASEVNPLPALHHSLGNIINDL 208
            .:..|:..|:.::..|.|.:.|   |..:.|.:|    |.|   ....||..::::::.|||..:
  Rat   141 ALMTLRNFGLGKKSLEQRMQEE---AHYLVEAIR----EEK---GKPFNPHFSINNAVSNIICSV 195

  Fly   209 VFGITYKRDDPDWLYLQRLQEEGVKL--IGVSGVVNFLPW-LRHLPANVRNIRFLLEGKAKTHAI 270
            .||..::..|..:..:.||.:|.:.|  ..:|.:.|..|| ::::|.:                 
  Rat   196 TFGERFEYHDSRFQEMLRLLDEVMYLETTMISQLYNIFPWIMKYIPGS----------------- 243

  Fly   271 YDRIVEACGQRLKEKQKVFKELQEQKRLQRQLEKEQLRQSKEADPS-------QEQSEADEDDEE 328
                          .|.||:..::.|.....:..:..:.....:|.       :|.|:..|....
  Rat   244 --------------HQTVFRNWEKLKLFVSSMIDDHRKDWNPEEPRDFIDAFLKEMSKYPEKTTS 294

  Fly   329 SDEEDTYEPECILEHFLAVRDTDSQLYCDDQLRHLLADLFGAGVDTSLATLRWFLLYLAREQRCQ 393
            .:||:                    |.|.      ..|||.||.:|:..||||.|||:|.....|
  Rat   295 FNEEN--------------------LICS------TLDLFFAGTETTSTTLRWALLYMALYAEVQ 333

  Fly   394 RRLH-ELLLPLGP--SPTLEELEPLAYLRACISETMRIRSVVPLGIPHGCKENFVVGDYFIKGGS 455
            .::. |:...:|.  :.:|.:.|.:.|..|.|.|..|:.:::||.:|.....:..:..:.:..|:
  Rat   334 EKVQAEIDRVIGQKRAASLADRESMPYTNAVIHEVQRMGNIIPLNVPREVAMDTTLNGFHLPKGT 398

  Fly   456 MIVCSEWAIHMDPVAFPEPEEFRPERFLTADGAYQAPPQFIPFSSGYRMCPGEEMARMILTLFTG 520
            |::.:..|:|.||..:..|:.|.||.|| .:|.::....|:|||.|.|.|.||::||..|.:|..
  Rat   399 MVLTNLTALHRDPKEWATPDVFNPEHFL-ENGQFKKRESFLPFSMGKRACLGEQLARSELFIFFT 462

  Fly   521 RILRRFHLELPSGTEVDMAGESGITLTPTPHML 553
            .::::|..:.|:..::.:...:|:||:|..|.:
  Rat   463 SLMQKFTFKPPTNEKLSLKFRNGLTLSPVTHRI 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
phmNP_001285414.1 p450 49..555 CDD:278495 134/522 (26%)
Cyp2j4NP_075414.2 p450 44..496 CDD:278495 134/522 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000008
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X6
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.000

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