DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment phm and cyp27a1.3

DIOPT Version :9

Sequence 1:NP_001285414.1 Gene:phm / 32857 FlyBaseID:FBgn0004959 Length:574 Species:Drosophila melanogaster
Sequence 2:XP_002934001.3 Gene:cyp27a1.3 / 594905 XenbaseID:XB-GENE-18386061 Length:518 Species:Xenopus tropicalis


Alignment Length:596 Identity:130/596 - (21%)
Similarity:233/596 - (39%) Gaps:144/596 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 SVQSLSILLVPGALVLVILYLCERQCNDLMGAPPPGPWGLPFL------GYLPFLDARAPHKSLQ 74
            :|:..:.|.|.||.|:....|  :..:||     |||..|..|      |||     ...|:...
 Frog    24 TVRKKATLGVSGATVVEGKTL--KTLDDL-----PGPSPLKLLYWIFLRGYL-----FRTHELQV 76

  Fly    75 KLAKRYGGIFELKMGRVPTVVLSDAALVRDFFRRDVMTGRAP------LYLTHGIMGG--FGIIC 131
            ...|.||.::::...:...|.::...|:....|::   |:.|      :...|..:.|  :|.:.
 Frog    77 IFKKTYGPMWKMSDRQHAMVTVASPDLLESLLRKE---GKYPTRADMFIMREHRDLRGHSYGPVT 138

  Fly   132 AQEDIWRHAR----------RETIDWLKALGMTRRPGELRARLERRIARGVDECVRLFDTEAKKS 186
            .:...|...|          |||:.:         .|.:...:.       |..:::.:..|:.|
 Frog   139 EEGHQWHRIRTILNQRMLKPRETVVY---------AGSMNEVVS-------DLLLKIKELTAQSS 187

  Fly   187 CASEVNPLPALHH-----SLGNIINDLVFGITYKRDDPDWLYLQRLQEEGVKLIGVSGVVNFLPW 246
            ..::||.:..|.:     |:..::.:...|...|...|:       .::.:..||:  ::..|..
 Frog   188 SGTQVNGVAELMYKFAFESICTVLFETRLGCLNKEILPE-------TQKFIDSIGI--MLEHLTM 243

  Fly   247 LRHLPANVRNIRFLLEGKAKTHAIYDRIVEA------CGQRLKEKQKVFKELQEQKRLQRQLEKE 305
            |..||...:.|.          ..:.|.:||      .|::|.:|:  .::::.:.:...::|.|
 Frog   244 LTRLPQWTKGIL----------PYWGRYIEAWDTIFDFGKKLIDKK--MEDIEGRLKRGEEVEGE 296

  Fly   306 QLRQSKEADPSQEQSEADEDDEESDEEDTYEPECILEHFLAVRDTDSQLYCDDQLRHLLADLFGA 370
            .|                          ||    :|         .|.....:::...:.:|..|
 Frog   297 YL--------------------------TY----LL---------SSGKLSMEEVYGSVVELLQA 322

  Fly   371 GVDTSLATLRWFLLYLAREQRCQRRLHELLLPLGPSPTLEELEPLA---YLRACISETMRIRSVV 432
            ||||:..||.|.|..|:|....|..|::.::.:.|..|:.:.|.:|   .|:|.|.||:|:..||
 Frog   323 GVDTTSNTLTWALYQLSRNPEIQNNLYQEVIRVIPGETIPDSEAIARMPLLKAVIKETLRLFPVV 387

  Fly   433 PLGIPHGCKENFVVGDYFIKGGSMIVCSEWAIHMDPVAFPEPEEFRPERFLTADGAYQAPPQFIP 497
            |.......::...:.||.....:..:...:||..|...|||.:.|.|||:|...|....|...||
 Frog   388 PENARMINEKEVTIKDYVFPVKTQFILGHYAISRDETTFPEADRFLPERWLRDSGMKHHPFGSIP 452

  Fly   498 FSSGYRMCPGEEMARMILTLFTGRILRRFHLELPSGTEVDMAGESG-----ITLTPTPHMLRFTK 557
            |..|.|.|.|..:|.:.:.|...||::.|.: :|   :.|: ||.|     :.:...|..|||  
 Frog   453 FGYGVRACVGRRIAELEMHLALSRIIKMFQV-IP---DPDL-GEVGAKNRAVLVANRPVNLRF-- 510

  Fly   558 LPAVEMRHAPD 568
               :|.:..|:
 Frog   511 ---IERQPRPE 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
phmNP_001285414.1 p450 49..555 CDD:278495 117/548 (21%)
cyp27a1.3XP_002934001.3 cytochrome_P450 79..508 CDD:425388 107/512 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.