DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment phm and Cyp2d3

DIOPT Version :9

Sequence 1:NP_001285414.1 Gene:phm / 32857 FlyBaseID:FBgn0004959 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_775116.1 Gene:Cyp2d3 / 24303 RGDID:2472 Length:500 Species:Rattus norvegicus


Alignment Length:559 Identity:144/559 - (25%)
Similarity:233/559 - (41%) Gaps:101/559 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LVPGALVLVILYLCERQCNDLM-------GAPPPGPWGLPFLGYLPFLDARAPHKSLQKLAKRYG 81
            |.|.|:..||..|..    |||       ...||||...|.||.|..:|......|:.||..|||
  Rat     9 LWPMAIFTVIFILLV----DLMHRRQRWTSRYPPGPVPWPVLGNLLQVDLCNMPYSMYKLQNRYG 69

  Fly    82 GIFELKMGRVPTVVLSDAALVRDFFRRDVMTG-----RAPLYLTHGIMGGFG------IICAQED 135
            .:|.|:||..|.||::....|::..   |..|     |..:.:...|  |:|      ::.....
  Rat    70 DVFSLQMGWKPVVVINGLKAVQELL---VTCGEDTADRPEMPIFQHI--GYGHKAKGVVLAPYGP 129

  Fly   136 IWRHARRETIDWLKALGMTRRPGELRARLERRIARGVDECVRLFDTEAKKSCASEVNPLPALHHS 200
            .||..||.::..|:..|:.::      .||:.:   .||...|.|....:: ...::|...|:.:
  Rat   130 EWREQRRFSVSTLRNFGVGKK------SLEQWV---TDEASHLCDALTAEA-GRPLDPYTLLNKA 184

  Fly   201 LGNIINDLVFGITYKRDDPDWLYLQRLQEEGV-KLIGV-SGVVNFLPWLRHLPANVRNIRFLLEG 263
            :.|:|..|::...:...|||::.:.::.:|.: :..|: ..|:|..|.|..:|           |
  Rat   185 VCNVIASLIYARRFDYGDPDFIKVLKILKESMGEQTGLFPEVLNMFPVLLRIP-----------G 238

  Fly   264 KAKTHAIYDRIVEACGQRLKEKQKVFKELQEQKRLQRQLEKEQLRQSKEADPSQEQSEADEDDEE 328
            .|                    .|||   ..||.....::.......|..||.|           
  Rat   239 LA--------------------DKVF---PGQKTFLTMVDNLVTEHKKTWDPDQ----------- 269

  Fly   329 SDEEDTYEPECILEHFLA----VRDTDSQLYCDDQLRHLLADLFGAGVDTSLATLRWFLLYLAR- 388
                   .|..:.:.|||    .:......:.|..||.::.||||||:.|:..||.|.||.:.. 
  Rat   270 -------PPRDLTDAFLAEIEKAKGNPESSFNDANLRLVVNDLFGAGMVTTSITLTWALLLMILH 327

  Fly   389 ---EQRCQRRLHELLLPLGPSPTLEELEPLAYLRACISETMRIRSVVPLGIPHGCKENFVVGDYF 450
               :.|.|:.:.|::..: ..|.:.:...:.:..|.|.|..|...:||:.:||....:..|..:.
  Rat   328 PDVQCRVQQEIDEVIGQV-RHPEMADQAHMPFTNAVIHEVQRFADIVPMNLPHKTSRDIEVQGFL 391

  Fly   451 IKGGSMIVCSEWAIHMDPVAFPEPEEFRPERFLTADGAYQAPPQFIPFSSGYRMCPGEEMARMIL 515
            |..|:.::.:..::..|...:.:|..|.||.||.|.|.:.....|:|||:|.|.|.||.:|||.|
  Rat   392 IPKGTTLIPNLSSVLKDETVWEKPLRFHPEHFLDAQGNFVKHEAFMPFSAGRRACLGEPLARMEL 456

  Fly   516 TLFTGRILRRFHLELPSG-TEVDMAGESGITLTPTPHML 553
            .||...:|:||...:|:| ......|.....|:|:|:.|
  Rat   457 FLFFTCLLQRFSFSVPTGQPRPSDYGVFAFLLSPSPYQL 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
phmNP_001285414.1 p450 49..555 CDD:278495 135/527 (26%)
Cyp2d3NP_775116.1 p450 37..496 CDD:278495 135/527 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X6
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.000

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