DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment phm and Cyp2b1

DIOPT Version :9

Sequence 1:NP_001285414.1 Gene:phm / 32857 FlyBaseID:FBgn0004959 Length:574 Species:Drosophila melanogaster
Sequence 2:XP_038950984.1 Gene:Cyp2b1 / 24300 RGDID:2466 Length:517 Species:Rattus norvegicus


Alignment Length:592 Identity:156/592 - (26%)
Similarity:241/592 - (40%) Gaps:129/592 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 PSVQSLSILLVPGALVLVILYLCERQCNDLMGAP------PPGPWGLPFLGYL----------PF 63
            ||:..|..||| |.|:|::           .|.|      ||||..||.||.|          .|
  Rat     3 PSILLLLALLV-GFLLLLV-----------RGHPKSRGNFPPGPRPLPLLGNLLQLDRGGLLNSF 55

  Fly    64 LDARAPHKS-LQ---------------KLAKRYGGIFELKMGRVPTVVLSDAALVRDFF--RRDV 110
            :....|..: ||               ||.::||.:|.:.:|..|.|:|.....:::..  :.:.
  Rat    56 MQPGPPQPTDLQGVVVASTMQHLSPAVKLREKYGDVFTVHLGPRPVVMLCGTDTIKEALVGQAED 120

  Fly   111 MTGRAPLYLTHGIMGGFGIICAQEDIWRHARRETIDWLKALGMTRRPGELRARLERRIARGVDEC 175
            .:||..:.:...|...:|:|.|..:.|:..||.::..::..||.:|..|.|          :.|.
  Rat   121 FSGRGTIAVIEPIFKEYGVIFANGERWKALRRFSLATMRDFGMGKRSVEER----------IQEE 175

  Fly   176 VRLFDTEAKKSCASEVNPLPALHHSLGNIINDLVFGITYKRDDPDWLYLQRLQEEGVKLIG--VS 238
            .:....|.:||..:.::|.........|||..:|||..:...|..:|.|..|......|:.  .|
  Rat   176 AQCLVEELRKSQGAPLDPTFLFQCITANIICSIVFGERFDYTDRQFLRLLELFYRTFSLLSSFSS 240

  Fly   239 GVVNFLP-WLRHLPANVRNIRFLLEGKAKTHAIYDRIVEACGQRLKEKQKVFKELQEQKRLQRQL 302
            .|..|.. :|::.|...|.|...|:          .|::..| .:.||.:.              
  Rat   241 QVFEFFSGFLKYFPGAHRQISKNLQ----------EILDYIG-HIVEKHRA-------------- 280

  Fly   303 EKEQLRQSKEADPSQEQSEADEDDEESDEEDTY----EPECILEHFLAVRDTDSQLYCDDQLRHL 363
                     ..|||..:          |..|||    |.|         :.....::..:.|...
  Rat   281 ---------TLDPSAPR----------DFIDTYLLRMEKE---------KSNHHTVFHHENLMIS 317

  Fly   364 LADLFGAGVDTSLATLRW-FLLYLAREQRCQRRLHELLLPLGPS--PTLEELEPLAYLRACISET 425
            |..||.||.:||..|||: |||.|......::...|:...:|..  |||::...:.|..|.|.|.
  Rat   318 LLSLFFAGTETSSTTLRYGFLLMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRSKMPYTDAVIHEI 382

  Fly   426 MRIRSVVPLGIPHGCKENFVVGDYFI-KGGSMIVCSEWAIHMDPVAFPEPEEFRPERFLTADGAY 489
            .|...:||:|:||...::.:...|.: |...:......|:| ||..|..|:.|.||.||.|:||.
  Rat   383 QRFSDLVPIGVPHRVTKDTMFRGYLLPKNTEVYPILSSALH-DPQYFDHPDSFNPEHFLDANGAL 446

  Fly   490 QAPPQFIPFSSGYRMCPGEEMARMILTLFTGRILRRF----HLELPSGTEVDMA-GESGITLTPT 549
            :....|:|||:|.|:|.||.:||..|.||...||:.|    ||   :..::|:. .||||...|.
  Rat   447 KKSEAFMPFSTGKRICLGEGIARNELFLFFTTILQNFSVSSHL---APKDIDLTPKESGIGKIPP 508

  Fly   550 PHMLRFT 556
            .:.:.|:
  Rat   509 TYQICFS 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
phmNP_001285414.1 p450 49..555 CDD:278495 144/549 (26%)
Cyp2b1XP_038950984.1 CYP2B 88..512 CDD:410765 129/490 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000008
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X6
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.000

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