DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hou and RanBPM

DIOPT Version :10

Sequence 1:NP_573315.1 Gene:Hou / 32852 FlyBaseID:FBgn0030944 Length:225 Species:Drosophila melanogaster
Sequence 2:NP_001303342.1 Gene:RanBPM / 36102 FlyBaseID:FBgn0262114 Length:1127 Species:Drosophila melanogaster


Alignment Length:322 Identity:59/322 - (18%)
Similarity:96/322 - (29%) Gaps:149/322 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LQRLEQFPF----KQADMNRLIMNYLVTEGFKEAAEKFQHEADLEPSVELSSLDGRILIREAVQA 76
            |::::::|.    .:..||||:..|||...|.:.||.|....:...:.:|:|:..|..|.:.:..
  Fly   604 LRKIDRYPHLLETPENLMNRLVSTYLVHNAFSKTAEAFNGYTNQTFNEDLASIKTRQKIIKLILT 668

  Fly    77 GRIEEATQLVNQLHPELLGSDRYLFFHLQQLQLIELIRAGKVEEA---------------LSFAQ 126
            |::.:|.:...:..|.||.:::.|:|.|:..|.||:|....:|..               .|..|
  Fly   669 GKMSQAIEHTLRSFPGLLENNKNLWFALKCRQFIEMINGADIENVNNKVTATTQTMPTNQTSVIQ 733

  Fly   127 S----KLSESG------------------------------------------------------ 133
            |    |.|:||                                                      
  Fly   734 STKTFKHSKSGSGNGNVNINQTQQQNNTAIPAVIKPQGGDRPDIKNMLVDDNSNKCVEHDSNSMD 798

  Fly   134 ----------------------------------------------------------------- 133
                                                                             
  Fly   799 VEMEPCQSHSNGGDSSSNGNASAVRNSLDAIDEEMDVSPSSRNCGRVIEKILEFGKELSSMGQQL 863

  Fly   134 --EEAMFELERTL-----ALLAFEKPQESPFADLLEQSYRQKIASELNSAILRCEQSEDSTP 188
              |..|.|.||.:     :|:|:..|..||...||..|.|:.:::.||||||.....|...|
  Fly   864 EKENLMTEEERQMLEDAFSLIAYSNPWSSPLGWLLCPSRRESVSTTLNSAILESLNFERRPP 925

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HouNP_573315.1 LisH 28..52 CDD:462501 11/23 (48%)
CTLH 67..205 CDD:402305 44/267 (16%)
RanBPMNP_001303342.1 Extensin_2 55..103 CDD:252669
SPRY_RanBP9_10 442..584 CDD:293966
LisH 620..641 CDD:474848 10/20 (50%)
CTLH 655..711 CDD:128914 15/55 (27%)
CRA 846..944 CDD:214806 22/80 (28%)
Blue background indicates that the domain is not in the aligned region.

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