DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup35 and Nup35

DIOPT Version :10

Sequence 1:NP_573314.1 Gene:Nup35 / 32851 FlyBaseID:FBgn0030943 Length:331 Species:Drosophila melanogaster
Sequence 2:XP_061511626.1 Gene:Nup35 / 1275468 VectorBaseID:AGAMI1_013660 Length:401 Species:Anopheles gambiae


Alignment Length:422 Identity:141/422 - (33%)
Similarity:188/422 - (44%) Gaps:112/422 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEPMNLGSPVNS---------PGSNQTQYLPPFLLGDPQGITPHKNTLSPKTGRSNISFA----T 52
            ||||.||||..|         ||     |||.||:|||.. ||..|||||..|||:::::    :
Mosquito     1 MEPMTLGSPSGSSLSGAAGAGPG-----YLPSFLMGDPPS-TPRPNTLSPTRGRSSLAYSHGLMS 59

  Fly    53 SP--GGSSP------HELNRSALSTRTLFAAQGGAHTAVGANSSTTAHGQTHS---HHQ------ 100
            ||  |..||      |..::.....:.|.    |.|........:::..|.|:   ||.      
Mosquito    60 SPPDGLRSPTLQHQHHHHHQQQQQQQHLL----GLHQQQHQQQLSSSFMQPHTPQGHHVPHSQRY 120

  Fly   101 -----------------------------TGPPTQGLFDSLREQSVTPKKKNHLGMLQLQSP--- 133
                                         |||||||||||.|       |:..|    ||:|   
Mosquito   121 LQNPQPAQAAAAAAANQFRNESFDANSSITGPPTQGLFDSWR-------KEKQL----LQTPMRA 174

  Fly   134 NQSYQSSYHTND------SFAPG--------APNAINASMRALCSPL---------GATASPAGG 175
            .|..||....|.      :..||        |.|....::..:.||:         ..|.||.||
Mosquito   175 QQQQQSGPGNNPADQATATIGPGGAPFNESYAQNQSGFNLSRVMSPIPVDYNQRNVSITTSPTGG 239

  Fly   176 L----GTSVTTGGNSRLSDFWVTIFGFPPGAGSMVLQHFTVCGTIVDVVHAPQNGNWMYVRYSSR 236
            .    |...|....:..|..|||:||||..|.|.:|.||...|||||...|||||||:::|||||
Mosquito   240 AAPFGGQQQTQVQQAAKSSNWVTVFGFPQNAASKILSHFIGIGTIVDKQPAPQNGNWVHLRYSSR 304

  Fly   237 IESDKALNYNEKIIAGNVMVGVSRCTDRSVIDKENIGSVPNAEIG-DPPTSPS-AIRPFSQQSYK 299
            :|.|:|||||.:||:..:|:||..|.|.:::.|||.|:..|...| ..|..|. .:|.....||.
Mosquito   305 LECDRALNYNGRIISEGLMIGVQYCNDPAILGKENEGNEYNDAQGVSSPDKPLWRVRSLMNMSYS 369

  Fly   300 LARKDNIISPQKDVPQKSSGLMDKAMDLIFGW 331
            ..:....:.....|.::::|:::|||||.|||
Mosquito   370 AMQDPQAVISAPPVQKRANGIVNKAMDLFFGW 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup35NP_573314.1 Nup35_RRM 190..268 CDD:398713 43/77 (56%)
Nup35XP_061511626.1 None

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