DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rip11 and LOC570939

DIOPT Version :9

Sequence 1:NP_573313.2 Gene:Rip11 / 32850 FlyBaseID:FBgn0027335 Length:832 Species:Drosophila melanogaster
Sequence 2:XP_017214657.1 Gene:LOC570939 / 570939 -ID:- Length:1271 Species:Danio rerio


Alignment Length:1330 Identity:283/1330 - (21%)
Similarity:403/1330 - (30%) Gaps:605/1330 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 WSPTHCSVTVQRARGLLTKGKNGTNNCFVTIALGKEKYQTSVKDKAETSVNWNEECELKI----- 61
            |.|||.:|||.|||.|.||||.|:...:..|.:|||||.|.:.:||| ...|.|||..::     
Zfish    13 WVPTHVNVTVLRARALRTKGKQGSRYVYTIIQVGKEKYTTGLVEKAE-EPQWGEECAFELLPGLL 76

  Fly    62 ---------PDQGNRAELTLTCLHRNNLGIDEFLGQATLPLNEMDVYDR---PRAKWFKLESKPG 114
                     |...|   |..|.:||..:|:|.||||..:||::  |:..   ||.:|.||.||.|
Zfish    77 EAGGTSAYPPGSSN---LVFTVMHRVLIGLDVFLGQTIVPLDK--VFQEGTCPRNEWLKLHSKAG 136

  Fly   115 KEKKNKERGELEVRIAFVVK--SGSLTDLSKKDKHKSSIGQLASSVGGSLLSI------------ 165
              :|.||||||:|.|.|...  :.|:.||:.|||.:|:.|:|...|.|....:            
Zfish   137 --RKEKERGELQVTIQFTRNNMTASMYDLTVKDKPRSAFGKLKDRVTGKKRDVESSSAVLPGRYA 199

  Fly   166 -----------GNG------------EKRRGIKKLAGSLSSKLHIRSKKKNQEAGADDS---SSF 204
                       |:|            |.|..:|..  .|..||...|..::..:.|.||   ||.
Zfish   200 ALSGSVGPPFAGDGGSYEASEEDGVEEHRSKVKDF--FLKGKLRKNSDTRSCSSLASDSSMASSA 262

  Fly   205 GGSFASLGTPNSSNGRGQNGGSGRRRGGQRAGEADPGVISEDEDEFVFDN------LSHKSSGSS 263
            |..|..:..|.:                       |...|...:.|..|.      ::||.:.|.
Zfish   263 GDPFIPVEIPRT-----------------------PIYSSRVMEPFRMDTEEAIKVMTHKRAHSD 304

  Fly   264 LNIQRIGLQPPPVGTPNFTPRHPSPLLNNGVSGVGSGSAKGKQ-AVLPA---TLDEDASIDAEME 324
             ...:|...|.|  :|.......|.|..||.....|.....|. :.:||   .|::.|.:...::
Zfish   305 -EASKITCVPRP--SPAVENLSQSTLCINGSHIYSSEPVSPKSPSAIPAKRSLLEKCAPLSRSLQ 366

  Fly   325 QL---------------ELDFSVRAHARANANASASGNASTLPPPSKPPRIPLSQVDEQP--AAG 372
            .|               .:|.|.:.....|| |.:....||:             ||.:|  |||
Zfish   367 NLTRRGEDSQKSDGRRWSIDKSKKEDLETNA-AQSQTQGSTI-------------VDGKPVQAAG 417

  Fly   373 SLE-REKPKE----------------KP------AEVESDKDEWASKLYGGG---KYLEIGSSNS 411
            ::: .:|.|:                ||      |.||..:..|    :|.|   ....:|.|..
Zfish   418 AVDVLDKGKKLRKTLFSSGRSDSLPAKPEQGQVSAPVEGRRRGW----FGSGDSQNKPRLGVSPK 478

  Fly   412 LKRRSWEDRVPLPASVEEPP---PLHSSSSSSSSSSDSDDDDEKPPQAAP--PPVPVPASLPVPS 471
            ::..| |....:|.|..:||   ||..::.|.|           ||...|  |..|.|.|:. ||
Zfish   479 VESSS-ELPCQIPCSPSQPPCSLPLGCTTGSVS-----------PPSGNPFTPSSPTPPSIS-PS 530

  Fly   472 ---------------AAASTASADPVV---ATSSSLFSPDVEH---RNFDTFNASFAKYE----- 510
                           ..|..|...|..   :.:|||:.|....   ||.........|.|     
Zfish   531 NPFLTRLQQNPFFEELIAEEALKSPTAGYCSLNSSLYHPVSRSSVLRNGAQNRIPTIKRERPRSM 595

  Fly   511 --QRNSTAIFADEPELED---------------------LTVELEKPAPTPTARPK-PQPR---- 547
              ||:...|..:.|:...                     .:..|:.|:.|||..|. |.|.    
Zfish   596 SRQRSLPTIMPETPDTNSNGNPNHCLSERVGDWDDFEAFASSRLKSPSGTPTRPPSAPFPNTNLM 660

  Fly   548 -----ATADLRAEE---------EKAKEEAARQLRAE---EDARLEAELRLNEERLREEEEAMQR 595
                 .|..||.:|         :.......|.:|.:   .|:.|:          |.:|.|:|:
Zfish   661 ECVNDTTIGLRVDEVDMGVSRQWDLPPLPPRRPIRTQVVSTDSWLD----------RAQEMAVQK 715

  Fly   596 E---LEEEKERQKQLQMDEQQRREAKRWEEDQRLLSFA-------------KRSTSLEEP----- 639
            |   |.:......|...|...:|.::....|:.|.:|:             |.|..:.||     
Zfish   716 EACFLSQTDFASLQHVRDGDVKRNSQTVCSDKVLHNFSSVENNNMELQSGIKLSEYIGEPTGQDF 780

  Fly   640 --------------------------VPE------------------------KQ--ELKHEREL 652
                                      |||                        ||  ||..|.::
Zfish   781 ATNNNANTSPNGFVEDALGSSECEYTVPETLCFPSDWETTVAESLCSSPQTQPKQDSELSFEGKV 845

  Fly   653 VAKQE-PEKTLD----TAEPEPEHN---------FLTPEQSPKEFQ----TNGS--------GSG 691
            ..:|: ..||.|    |..|...:|         |:..|.||.|.|    .|||        |||
Zfish   846 SDEQQCKSKTNDVNLLTLSPRDSNNNTDVTSEFAFIDSESSPSELQPFEIKNGSKECSNVHFGSG 910

  Fly   692 SG----------------------------------ERWEKRLGKFKYGNKRDK-------YNND 715
            |.                                  ||..:.||:.|..:..::       .|||
Zfish   911 SSLPRCSPGIPEDILSKMASELDMFSPKNALCSSPYERSCEGLGEQKANSCENQNCDVDVLLNND 975

  Fly   716 N---------------------------------------------------------------- 716
            |                                                                
Zfish   976 NTVTNPKMSESDCILHTTHNNEEHKVLDSENKLEPEVSLSTDNKIQEYTSTSEQQISFEDLHARV 1040

  Fly   717 ---DSNSP-----------------SPKS------------------------------------ 725
               :|.||                 |||:                                    
Zfish  1041 APRNSRSPCKMEVRSARIRPRSTTSSPKNVQGADQLPDSHTPTSNLSLHDPTPSPSQLLDTNSCL 1105

  Fly   726 -----------TERIIIG---------HEKSGSH---------------ADRRSEI--------- 746
                       .||..:|         ||:|..|               |:.||.:         
Zfish  1106 HSDPSLPANPQNERPSMGSTRSTTIQPHEESSPHPVKPLTNNTLQGEKKAESRSVLEKLKSTINP 1170

  Fly   747 --SAQLAKKYEGKSREELM-------------LIANGMENEALLQRQR----------------- 779
              ||......|.|.:..||             |||..::.|..:::||                 
Zfish  1171 GRSALATTAEEEKQQLSLMEARAHYQNMTNMELIALLLQQELEIKKQRAETEVQVVMLEKRDAEL 1235

  Fly   780 ------VKELEDYLDNLLLRVMETHPKILQ 803
                  |::||||:|.||:|:||..|.:||
Zfish  1236 KKMKVQVRDLEDYIDKLLVRIMEQTPTLLQ 1265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rip11NP_573313.2 C2_Rab11-FIP_classI 7..130 CDD:176064 57/139 (41%)
RBD-FIP 758..805 CDD:255374 22/82 (27%)
LOC570939XP_017214657.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170576715
Domainoid 1 1.000 82 1.000 Domainoid score I8334
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 178 1.000 Inparanoid score I4018
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D259412at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25113
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR15746
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X973
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1010.000

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