DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rip11 and Rab11fip1

DIOPT Version :9

Sequence 1:NP_573313.2 Gene:Rip11 / 32850 FlyBaseID:FBgn0027335 Length:832 Species:Drosophila melanogaster
Sequence 2:NP_001178484.1 Gene:Rab11fip1 / 498650 RGDID:1562965 Length:1189 Species:Rattus norvegicus


Alignment Length:1252 Identity:268/1252 - (21%)
Similarity:387/1252 - (30%) Gaps:533/1252 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MWSPTHCSVTVQRARGLLTKGKNGTNNCFVTIALGKEKYQTSVKDKAETSVNWNEECELKIP--- 62
            ||||||..|||.:||||..||..||::.:..|.:|||||.|||.:::..:..|.||...::|   
  Rat    14 MWSPTHVQVTVLQARGLRAKGPGGTSDAYAVIQVGKEKYATSVSERSLGAPVWREEATFELPPLL 78

  Fly    63 DQGN-----RAELTLTCLHRNNLGIDEFLGQATLPLNEMDVYDRPRAK--WFKLESKPGKEKKNK 120
            ..|.     .|.|.||.|||..||:|:|||:|.:.|.|:. .|:.|.|  |:.|:||||  ||:|
  Rat    79 SSGTAPAAAAATLQLTVLHRALLGLDKFLGRAEVDLRELH-RDQSRRKKQWYTLKSKPG--KKDK 140

  Fly   121 ERGELEVRIAFVVK--SGSLTDLSKKDKHKSSIGQLASSVGG----------------SLLSIGN 167
            ||||:||.|.|:..  :.|:.|||.|||.::..|:|...:.|                :..|:.:
  Rat   141 ERGEIEVDIQFMRNNMTASMFDLSMKDKSRNPFGKLKDKIKGKNKDNTSDTASAIVPSTTPSVDS 205

  Fly   168 GE--------KRRGIKKLAGS-------LSSKLHI----------------RSKKKNQEAGADDS 201
            .:        |:..||.|...       ||..:.:                :|:..::....|:|
  Rat   206 DDESFSKDKKKKSKIKTLFSKPSLQKTPLSQSMSVLPTSKPDKVLLRPGDFQSRWGDEGDNEDES 270

  Fly   202 SSFGGSFASLGT-------PNSSNG--------------RGQNGGSGRRR---GGQRAGEADPGV 242
            ||.....:...|       ||.||.              |.:|....|..   .|.......|..
  Rat   271 SSASEVMSQKRTSSTDHTQPNQSNFSLPKKEGLSFLGGLRSKNDSLSRSNVCINGNHVYMEQPEA 335

  Fly   243 ISEDEDEFVFDNLSHKSSGSSLNIQRIGLQPPPVG---------TPNFTPRHPSPLLNNGVSGVG 298
            .||          ..:||.|:        .|.|.|         |.|...|.|..      .|.|
  Rat   336 KSE----------IRESSPSN--------SPSPQGFRKRHLFSSTENLAARSPKE------PGEG 376

  Fly   299 SGSAKGKQAVLPATLDEDASIDAEMEQLELDFSVRAHARANANASASGNASTLPPPSKPPRIPLS 363
            .|.:..::.       .|:|....|:.:.|                            |...||:
  Rat   377 GGMSSDRRL-------SDSSTKDSMKSMSL----------------------------PSYRPLT 406

  Fly   364 QVDEQ----PAAGSLEREKPKEKPAEVESDKDEWASKLYGGGKYLEIGS---------------- 408
            ..|.:    ||...:..::.|:...: ||.|....| |..|.|.:..||                
  Rat   407 TADSREGLSPANMEVATKETKDSKKQ-ESKKSSLLS-LVTGKKDVAKGSEGEPLPPVSEKEKGRK 469

  Fly   409 ---------SNSLKRRSWEDRVPLPAS-VEEPPPLHSSSSSSSSSSDSDDDDEKPPQAAP----- 458
                     ...|.||..:|.||:.:. .....|...:..|...:|.....:.|||...|     
  Rat   470 GVLVEAQLREEDLVRRPEKDAVPVASQWGSSQNPFEDAQISDLEASVESKCEPKPPVPVPRTPQT 534

  Fly   459 --------------PPVPVPASLPVPSAAASTASAD-PVVA--------------TSSSLFSP-- 492
                          |...:|:|...|.||..::||. ||::              ::||..||  
  Rat   535 RAVKPRLEVSPEAQPKARLPSSDSAPFAAFLSSSAQAPVLSDLRCDSETQFSESPSASSFSSPLA 599

  Fly   493 -------DVEHRNFDTFNASFAKYEQRNSTAIFADEPELEDLTVELEKPA--------------- 535
                   .|||...|...|.             |:||.|....:....||               
  Rat   600 APISTSTPVEHWPTDKGEAD-------------AEEPSLLLRAISSVTPAANAGSSASRSPCEQL 651

  Fly   536 PTPTARPKPQPRATADLRA----------EEEKA----KEE------------------AARQLR 568
            ||| .|..||..:....|.          |.||:    .||                  |...::
  Rat   652 PTP-ERKGPQESSGGKARESGTGKEVGSDESEKSLIGQHEELLKIPFPERHWALGGMTTATSPVQ 715

  Fly   569 AEEDARLEAELRLNEERLREEEEAMQRELEEEKERQKQLQMDEQQRREAKRWEED------QRLL 627
            .||.|.....:|...:.:.:.....||:.::.....:||.::|:  .|...|.|:      |:|.
  Rat   716 EEEAASSFHSVRPKHQEMHQNASGGQRKAKKRVSFSEQLFVEEE--TEGPTWLEEGDKGHPQQLS 778

  Fly   628 SFAKRSTSL---------------EEPV---------------------------PEKQEL---- 646
            .....::|:               :|||                           .||.:|    
  Rat   779 QEGPVASSMPSAGSPESPHTEGTGQEPVTISSESESFLEGPQSEASPARGTQLLRDEKDDLMAPC 843

  Fly   647 -----KHE-----------------------------------------------------RELV 653
                 .||                                                     .:|.
  Rat   844 QSKASDHEGLLSNPLSDLPSASDLKSPIMADLSLSLPSIPEVASDDERFDETGDGGKGARLADLE 908

  Fly   654 AKQEP----EKTLDTA--------EPEPEHNFL-----TPEQSPKEFQTNGSGSGSGERWEKRLG 701
            |...|    ...|:||        |..|..|..     ||:.:|.| ||...||.     :..||
  Rat   909 AGVSPLNVSPSILETAGQTGGRAHESVPVENQCDLRPQTPKAAPSE-QTAALGSP-----KPHLG 967

  Fly   702 KF-----KY------------GNKRDKYNNDNDSNSPS---------------PKSTERIIIGHE 734
            |.     :|            |:.|.....|:...|||               |..|....:...
  Rat   968 KSSSVNEEYPGPDTVDEEKLKGSGRPGSPLDSPVRSPSLAETFPATHSFPGSPPSDTHHTTVAES 1032

  Fly   735 KSGSHADRRSE-----------------------ISAQ--------------------LAKKYEG 756
            :..:.||..|.                       :.||                    .|.|...
  Rat  1033 QKQATADVSSNRVENFGKKKPLLQAWVTPSEIHPVPAQPSAGAGAAKHRPHPVKPMNTTAPKITN 1097

  Fly   757 KSREELMLIANGMENEALLQRQ---------------------------------RVKELEDYLD 788
            .|.....:|:..:.||||:::.                                 :|:|||||:|
  Rat  1098 SSLGTATIISENLINEALMKKYQPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYID 1162

  Fly   789 NLLLRVMETHPKILQNP 805
            |||:||||..|.||:.|
  Rat  1163 NLLVRVMEETPNILRVP 1179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rip11NP_573313.2 C2_Rab11-FIP_classI 7..130 CDD:176064 59/132 (45%)
RBD-FIP 758..805 CDD:255374 23/79 (29%)
Rab11fip1NP_001178484.1 C2_Rab11-FIP_classI 20..150 CDD:176064 59/132 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 164..470 64/366 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 483..504 5/20 (25%)
RBD-FIP 1132..1179 CDD:255374 17/46 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166337535
Domainoid 1 1.000 79 1.000 Domainoid score I8482
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 171 1.000 Inparanoid score I4021
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D259412at33208
OrthoFinder 1 1.000 - - FOG0002878
OrthoInspector 1 1.000 - - otm45722
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR15746
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X973
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1010.000

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