DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rip11 and rab11fip1b

DIOPT Version :9

Sequence 1:NP_573313.2 Gene:Rip11 / 32850 FlyBaseID:FBgn0027335 Length:832 Species:Drosophila melanogaster
Sequence 2:XP_005164248.1 Gene:rab11fip1b / 402861 ZFINID:ZDB-GENE-091204-322 Length:1317 Species:Danio rerio


Alignment Length:901 Identity:211/901 - (23%)
Similarity:353/901 - (39%) Gaps:228/901 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 WSPTHCSVTVQRARGLLTKGKNGTNNCFVTIALGKEKYQTSVKDKAETSVNWNEECELKIP--DQ 64
            |.||...|||.:||||..|||||||:.:..:.:.|||:.|||.:|:...| |.||....:|  ..
Zfish    10 WIPTSVQVTVLQARGLRCKGKNGTNDAYAIMQVAKEKFSTSVAEKSVAPV-WKEEASFDLPLFSS 73

  Fly    65 GN--RAELTLTCLHRNNLGIDEFLGQATLPLNEM-DVYDRPRAKWFKLESKPGKEKKNKERGELE 126
            ||  |..|.:..:||..:|.|:.||||::.|.|: |...|.:.:||||..|.|  |.:|:|||:.
Zfish    74 GNTERCTLQVCVMHRALVGPDKTLGQASINLLELQDNTSREKTEWFKLLGKTG--KADKDRGEVL 136

  Fly   127 VRIAFVVK--SGSLTDLSKKDKHKSSIGQLASSVGGSLLSIGNGEKRRGIKKLAGSLSSKLHIRS 189
            :.|.|:..  :.|:.|||.:||.:|.:|:|...:        .|:|:.|:...|.::...  :..
Zfish   137 LDIQFMKNNMTASMYDLSSQDKSRSRLGKLKDKL--------KGKKKDGMSDSASAIVPS--VGQ 191

  Fly   190 KKKNQEAGADDSSSFG----GSFASLGTPNSSNGRGQNGGSGRRRGGQRAGEADPGVISED---- 246
            ...:.||..:.:::.|    ....||..|.          ||.:|...::....|.:..:|    
Zfish   192 VLTDSEAEDEQNNTSGAKKKNKLKSLFVPK----------SGLQRNMSQSMSTLPTLPEKDSAIS 246

  Fly   247 ------------EDEFVFDNLSHKSSGSS---LNIQRIGLQPPPV---GTPNFTPRHPSPLLNNG 293
                        |.:..|..|.||.:|||   ::...:||..|.|   |:..:|....:      
Zfish   247 LSRSSGLNVESPEGKKKFKFLKHKRTGSSDSKVSQASLGLPQPNVCINGSHVYTEEPET------ 305

  Fly   294 VSGVGSGSAKGKQAVLPATLDEDASIDAEMEQLELDFSVRAHARANANASASGNASTLPPPSKPP 358
                 .||..|      :|...::|....||.|.     |.|.|..:|.|...            
Zfish   306 -----RGSRAG------STFSLNSSGHGSMEDLR-----RGHDRKTSNTSVDS------------ 342

  Fly   359 RIPLSQV-DEQPAAGSLEREKPKEKPAEVESDKDEWASKLYGGGKYLEIGSSNSLKRRSWEDRVP 422
             :..|:: .::.....:.|.:.:::..|.|                       ..||...|:|:.
Zfish   343 -LKTSELHTQEKTVEDMHRRQEEQRKQEEE-----------------------VRKRLEEEERME 383

  Fly   423 LPASVEEPPPLHSSSSSSSSSSDSDD---DDEKPPQAAPPPVPVPASLPVPSAAASTASADPVVA 484
            .....||...|..........:..::   ::||                                
Zfish   384 RLEREEEMRKLEKQEEERKRIAREEEKKREEEK-------------------------------- 416

  Fly   485 TSSSLFSPDVEHRNFDTFNASFAKYEQRNSTAIFADEPELEDLTVELEKPAPTPTARPKPQPRAT 549
             ...|...:||.:.       .|:.|:|.......::...|:...:||:......||.:.:.| .
Zfish   417 -RKKLEEEEVERKR-------IAREEERKRMEREEEKKREEEKRKKLEEEERKRVAREEERKR-E 472

  Fly   550 ADLRAEEEKAK----EEAAR-------QLRAEEDARLEAELR--------------LNEERLREE 589
            .:.|.||||.|    ||..|       :.:.||:.|.|.|.|              ..|||.|||
Zfish   473 EEKRREEEKRKKLEEEEVERKRVAREEERKREEEKRREEEKRKKLEEEEVERKRVAREEERKREE 537

  Fly   590 ----EEAMQRELEEEKERQKQLQMDEQQRREAKRWEEDQRLLSFAKRSTSLEEPVPEKQELKHER 650
                ||..:::||||:..:|::..:|:::||.:|..|::|     ||....||....::|.:.:|
Zfish   538 EKRREEEKRKKLEEEEVERKRVAREEERKREEERKREEER-----KRIAMEEEGRRMEREQEEKR 597

  Fly   651 ELVAKQEPEKTLDTAEPEPEHNFLTPEQSPKEFQTNGSGSGSGERWEKRLGKFKYGNKRDKYNN- 714
            :||..:|.::.:     |.|...:..||..:..:.........|:.:|...|.|...:.:|... 
Zfish   598 KLVKLEEEKRRV-----EEERMRIEQEQKIRGRKEEEMRKAEEEKRKKMEEKEKAREEEEKQRRM 657

  Fly   715 DNDSNSPSPKSTERI--IIGHE---KSGSHADRRSEISAQLAKKYEGKSREELMLIANGME---- 770
            :.:.|....|..|.|  |...|   |......||.|...::.|:.|...:|.:.|....||    
Zfish   658 EEEENERLRKEDEMIKRIKEEERLRKEEEEETRRKEEERRMNKEKERNEKERMELEKKKMEERMR 722

  Fly   771 -------------NEALLQRQRVKELEDYLDNLLLRVMETHPKILQNPYSRTTSAK 813
                         .:...:|:|:::.::.::. |.:..|..|::      :||||:
Zfish   723 EEQARKSAEEEEKRKEKAERERIRQEKEEVER-LRKEKEQRPEV------KTTSAR 771

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rip11NP_573313.2 C2_Rab11-FIP_classI 7..130 CDD:176064 53/127 (42%)
RBD-FIP 758..805 CDD:255374 9/63 (14%)
rab11fip1bXP_005164248.1 C2_Rab11-FIP_classI 15..140 CDD:176064 53/127 (42%)
RBD-FIP 1264..1310 CDD:255374
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 1.000 Domainoid score I8334
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D259412at33208
OrthoFinder 1 1.000 - - FOG0002878
OrthoInspector 1 1.000 - - otm25113
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.920

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