DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rip11 and rab11fip2

DIOPT Version :9

Sequence 1:NP_573313.2 Gene:Rip11 / 32850 FlyBaseID:FBgn0027335 Length:832 Species:Drosophila melanogaster
Sequence 2:NP_001106414.1 Gene:rab11fip2 / 100127577 XenbaseID:XB-GENE-5947669 Length:518 Species:Xenopus tropicalis


Alignment Length:837 Identity:186/837 - (22%)
Similarity:288/837 - (34%) Gaps:353/837 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 WSPTHCSVTVQRARGLLTKGKNGTNNCFVTIALGKEKYQTSVKDKAETSVNWNEECELKIP---- 62
            |.|||..|||..||.|..|||:|||:.:..|.||||||.|||.:|..:.| |.||...::|    
 Frog     9 WYPTHVQVTVLEARELHPKGKHGTNDTYTIIQLGKEKYSTSVVEKTLSPV-WKEEASFELPGLVM 72

  Fly    63 -DQGNRAELTLTCLHRNNLGIDEFLGQATLPLNEM-DVYDRPRAKWFKLESKPGKEKKNKERGEL 125
             :...:.:|.||.:||:.:|:|:||||..:.||.| :..:..:..|:|||||.|  |:|||||||
 Frog    73 EENAEQYQLQLTAMHRSLVGLDKFLGQVCINLNNMFEKKEHRKTGWYKLESKQG--KRNKERGEL 135

  Fly   126 EVRIAFVVK--SGSLTDLSKKDKHKSSIGQLASSVGGSLLSIGNGEKRRGIKKLAGSLSSKLHIR 188
            :|.|.|:..  :.|:.|||.|||.:|...:|.             :|.:|.|             
 Frog   136 KVNIQFMRNNMTASMFDLSVKDKTRSPFARLK-------------DKMKGRK------------- 174

  Fly   189 SKKKNQEAGADDSSSFGGSFASLGTPNSSNGRGQNGGSGRRRGGQRAGEADPGVISEDEDEFVF- 252
                  ..|:|.||:.        .|::||          ...||..|:.:..:.::.:..|:. 
 Frog   175 ------PDGSDTSSAI--------IPSTSN----------LHSGQDTGDKEIHIRNKPKKPFLLG 215

  Fly   253 -DNLSHKSSGSSLNIQRIGLQPPPVGTPNFTPRHPSPLLNNGVSGVGSGSAKGKQAVLPATLDED 316
             ..||...|.|.|                                :|..|:|...|.||..|..|
 Frog   216 PQRLSSAHSMSDL--------------------------------IGPQSSKMNAAGLPVKLPLD 248

  Fly   317 ASIDAEMEQLELDFSVRAHARANANASASGNASTLPPPSKPPRIPLSQVDEQPAAGSLEREKPKE 381
             ||.|                    |..||  ||..|..:...:..|:|:..| .||        
 Frog   249 -SISA--------------------ADESG--STKSPHRRTMSVDTSKVETNP-TGS-------- 281

  Fly   382 KPAEVESDKDEWASKLYGGGKYLEIGSSNSLKRRSWEDRVPLPASVEEPPPLHSSSSSSSSSSDS 446
                      :|:   .||                                          |:|.
 Frog   282 ----------DWS---IGG------------------------------------------STDP 291

  Fly   447 DDDDEKPPQAAPPPVPVPASLPVPSAAASTASADPVVATSSSLFSPDVEHRNFDTFNASFAKYEQ 511
            |      |..:|       :||                            :.|.|....:..|..
 Frog   292 D------PTVSP-------TLP----------------------------QKFATLPRQWTPYVD 315

  Fly   512 RNSTAIFADEPELEDLTVELEKPAPTPTARPKPQPRATADLRAEEEKAKEEAARQLRAEEDARLE 576
            :|      |..|....||    |.           ..:..|.::..:.|:|..::.:.....|:.
 Frog   316 KN------DSWETGGKTV----PG-----------NISGGLFSKSGEGKKEVKKKDKVSLFERVT 359

  Fly   577 AELRLNEERLREEEEAMQRELEEEKERQKQLQMDEQQRREAKRWEEDQRLLSFAKRSTSLEEPVP 641
            .                    ::|.:||.|..:|         |..|.|....|.::::.:...|
 Frog   360 G--------------------KKEGKRQSQENLD---------WGSDGRSPDSAGQASAYDSTNP 395

  Fly   642 EKQELKHERELVAKQEPEKTLDTAEPEPEHNFL---------TPEQSPKEFQTNGSGSGSGERWE 697
                                           ||         |.::|..:| ::|...|:.:   
 Frog   396 -------------------------------FLTNYRMGNQPTDQRSHLKF-SSGEAPGTAQ--- 425

  Fly   698 KRLGKFKYGNKRDKYNNDNDSNSPSPKSTERIIIGHEKSG--SHADRRSEISAQLAKKYEGKSRE 760
              :|:...|.:..:....:..:.|           .:.:|  ||. .|:|:..:|:|..|     
 Frog   426 --MGRHGRGAEHHQQKGRSPDSGP-----------FDGAGLYSHL-TRNEVERELSKHKE----- 471

  Fly   761 ELMLIANGMENEALLQRQ--RVKELEDYLDNLLLRVMETHPKILQNPYSRTTSAKRY 815
                         ||:|:  .::|||||:|:||:||||..|.||:.||..:..|.::
 Frog   472 -------------LLKRKDGHIRELEDYIDDLLVRVMEETPSILRVPYIPSKKAGKF 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rip11NP_573313.2 C2_Rab11-FIP_classI 7..130 CDD:176064 58/128 (45%)
RBD-FIP 758..805 CDD:255374 18/48 (38%)
rab11fip2NP_001106414.1 C2_Rab11-FIP_classI 14..140 CDD:176064 58/128 (45%)
RBD-FIP 458..505 CDD:370506 23/64 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 90 1.000 Domainoid score I7659
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D259412at33208
OrthoFinder 1 1.000 - - FOG0002878
OrthoInspector 1 1.000 - - otm48812
Panther 1 1.100 - - O PTHR15746
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5052
SonicParanoid 1 1.000 - - X973
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.050

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