DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wgn and TNFRSF4

DIOPT Version :9

Sequence 1:NP_728186.1 Gene:wgn / 32849 FlyBaseID:FBgn0030941 Length:343 Species:Drosophila melanogaster
Sequence 2:XP_011540376.1 Gene:TNFRSF4 / 7293 HGNCID:11918 Length:307 Species:Homo sapiens


Alignment Length:42 Identity:14/42 - (33%)
Similarity:19/42 - (45%) Gaps:3/42 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 SPCAPQHWWDSQRDRCTPCTRC--QGEMIPLRPCQLHTDTIC 137
            :||.|.|:.......|.|.|.|  .|:. .|:|....:|.||
Human   130 APCPPGHFSPGDNQACKPWTNCTLAGKH-TLQPASNSSDAIC 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wgnNP_728186.1 TNFR_c6 100..137 CDD:278449 11/38 (29%)
TNFRSF4XP_011540376.1 TNFRSF <95..174 CDD:304602 14/42 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
10.960

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