DRSC/TRiP Functional Genomics Resources

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Protein Alignment Bx and LHX3

DIOPT Version :10

Sequence 1:NP_001259687.1 Gene:Bx / 32846 FlyBaseID:FBgn0265598 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_055379.1 Gene:LHX3 / 8022 HGNCID:6595 Length:402 Species:Homo sapiens


Alignment Length:122 Identity:56/122 - (45%)
Similarity:75/122 - (61%) Gaps:6/122 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 LCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGY 155
            |||||.:||.||::|:|||..||..||||..|...|.|   ..:::|..:.||.|:.:.||..  
Human    35 LCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK-- 94

  Fly   156 CAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCE-NKILCEYDYE 211
            ||||...||..::|.||:..||||.||||..|..:...||.|||.| ::::|:.|||
Human    95 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BxNP_001259687.1 LIM1_LMO1_LMO3 92..146 CDD:188774 24/53 (45%)
LIM2_dLMO 156..210 CDD:188776 25/54 (46%)
LHX3NP_055379.1 LIM1_Lhx3b 33..87 CDD:188851 25/54 (46%)
LIM2_Lhx3_Lhx4 95..150 CDD:188762 25/54 (46%)
Homeodomain 163..219 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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