DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Bx and limd1

DIOPT Version :9

Sequence 1:	NP_001259687.1	Gene:	Bx / 32846	FlyBaseID:	FBgn0265598	Length:	424	Species:	Drosophila melanogaster
Sequence 2:	NP_001016606.1	Gene:	limd1 / 549360	XenbaseID:	XB-GENE-1017238	Length:	593	Species:	Xenopus tropicalis

Alignment Length:	132	Identity:	38/132 - (28%)
Similarity:	56/132 - (42%)	Gaps:	19/132 - (14%)

- Green bases have known domain annotations that are detailed below.

  Fly    92 CAGCGKHIQD-RYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGY 155
            |..|.|.:.. ....:|:..|:|..|..|..|..:|.  |...|.....:.|:.|:|    .:|:
Frog   397 CVKCSKGVYGANQACQAMGNLYHNGCFICSACSRKLR--GKAFYFVNGKVYCEEDFL----YSGF 455

  Fly   156 ------CAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCV-GDRFYL-CENKILCEYDYEE 212
                  |..|...|  .:|:::|....:|..||.|..||.  |: |..|.: .||||.|..||.:
Frog   456 HQSADRCFVCGHWI--MDMILQALGKSFHPGCFRCAVCNE--CLDGVPFTVDMENKIYCVKDYHK 516

  Fly   213 RL 214
            .|
Frog   517 IL 518

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Bx	NP_001259687.1	LIM1_LMO1_LMO3	92..146	CDD:188774	13/54 (24%)
Bx	NP_001259687.1	LIM2_dLMO	156..210	CDD:188776	19/55 (35%)
limd1	NP_001016606.1	Disordered. /evidence=ECO:0000256\|SAM:MobiDB-lite	308..336
		LIM1_Ajuba_like	397..450	CDD:188738	13/54 (24%)
		LIM2_Ajuba_like	462..514	CDD:188741	19/55 (35%)
		LIM3_Ajuba_like	522..583	CDD:188822
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910