DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Bx and lhx8a

DIOPT Version :10

Sequence 1:NP_001259687.1 Gene:Bx / 32846 FlyBaseID:FBgn0265598 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_001003980.1 Gene:lhx8a / 378959 ZFINID:ZDB-GENE-031008-2 Length:332 Species:Danio rerio


Alignment Length:121 Identity:48/121 - (39%)
Similarity:64/121 - (52%) Gaps:3/121 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 LCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGY 155
            :|..||..|.|:|||:..||.||..||.|..|...||. ..:.|.|...:.||.||.|.:|..  
Zfish    50 ICTSCGTEIVDKYLLKVNDMCWHVRCLSCSVCQTSLGR-HISCYIKEKEIFCKLDYFRKYGTR-- 111

  Fly   156 CAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYE 211
            ||.|.:.|.:.:.|.||:.|.|||.||||..|..:...|:.|.|.:.::||...|:
Zfish   112 CAHCGRNIHSNDWVRRAKGNTYHLACFACFSCKRQLSTGEEFALVDERVLCRVHYD 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BxNP_001259687.1 LIM1_LMO1_LMO3 92..146 CDD:188774 22/53 (42%)
LIM2_dLMO 156..210 CDD:188776 21/53 (40%)
lhx8aNP_001003980.1 LIM1_Lhx7_Lhx8 50..105 CDD:188767 23/55 (42%)
LIM2_Lhx7_Lhx8 112..166 CDD:188769 21/53 (40%)
Homeodomain 202..258 CDD:459649
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.