DRSC/TRiP Functional Genomics Resources

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Protein Alignment Bx and PDLIM5

DIOPT Version :9

Sequence 1:NP_001259687.1 Gene:Bx / 32846 FlyBaseID:FBgn0265598 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_001243355.2 Gene:PDLIM5 / 10611 HGNCID:17468 Length:625 Species:Homo sapiens


Alignment Length:141 Identity:36/141 - (25%)
Similarity:52/141 - (36%) Gaps:25/141 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 CAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYC 156
            |..|.:.|... ::.||...||..|..|..|...:.  .:..:.:.....|:.||..|||.  .|
Human   508 CGRCQRKILGE-VISALKQTWHVSCFVCVACGKPIR--NNVFHLEDGEPYCETDYYALFGT--IC 567

  Fly   157 AACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFASMAN 221
            ..|...|.|.:|.:.|....:|..||.|..|            ||:.        |...|.|..:
Human   568 HGCEFPIEAGDMFLEALGYTWHDTCFVCSVC------------CESL--------EGQTFFSKKD 612

  Fly   222 HPMLKRHVSSL 232
            .|:.|:|..|:
Human   613 KPLCKKHAHSV 623

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BxNP_001259687.1 LIM1_LMO1_LMO3 92..146 CDD:188774 11/53 (21%)
LIM2_dLMO 156..210 CDD:188776 13/53 (25%)
PDLIM5NP_001243355.2 PDZ_signaling 10..82 CDD:238492
DUF4749 105..201 CDD:406377
LIM1_ENH 449..500 CDD:188837
LIM 508..559 CDD:413332 11/53 (21%)
LIM3_ENH 567..621 CDD:188843 19/73 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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