DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Bx and ablim2

DIOPT Version :9

Sequence 1:	NP_001259687.1	Gene:	Bx / 32846	FlyBaseID:	FBgn0265598	Length:	424	Species:	Drosophila melanogaster
Sequence 2:	XP_031751181.1	Gene:	ablim2 / 100489272	XenbaseID:	XB-GENE-490231	Length:	672	Species:	Xenopus tropicalis

Alignment Length:	182	Identity:	54/182 - (29%)
Similarity:	72/182 - (39%)	Gaps:	36/182 - (19%)

- Green bases have known domain annotations that are detailed below.

  Fly    67 GNGNVQSIAAAANNNNNNNNNGSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGS 131
            |:||. .|.|..|            |.|||..|::...|.||:..||..|.||..|...|   .:
Frog   143 GSGNF-CIQALRN------------CGGCGLEIKNGQSLVALEKHWHLGCFKCKTCGMPL---KA 191

  Fly   132 TLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDR 196
            ...:|..:..|:.||...||..  |..|.|.|..  .|:.|....||..|..|.:|:..|..|:.
Frog   192 EYISKDGIPYCETDYHAKFGIK--CDHCEKFITG--RVLEAGEKHYHPTCACCVRCSQMFAEGEE 252

  Fly   197 FYLCENKI---LC-------EYDYEERLVFASMANHPMLKRHVSSLGQGSPT 238
            .||..|.|   :|       |.:.|.|....|:.:.|      :|...|||:
Frog   253 MYLQGNSIWHPICRQAAKTEERNKETRTSSESIISVP------ASSTSGSPS 298

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Bx	NP_001259687.1	LIM1_LMO1_LMO3	92..146	CDD:188774	17/53 (32%)
Bx	NP_001259687.1	LIM2_dLMO	156..210	CDD:188776	19/63 (30%)
ablim2	XP_031751181.1	LIM1_abLIM	26..77	CDD:188713
		LIM2_abLIM	82..137	CDD:188714
		LIM3_abLIM	155..206	CDD:188715	17/53 (32%)
		LIM4_abLIM	214..269	CDD:188716	18/56 (32%)
		AbLIM_anchor	278..636	CDD:406566	7/27 (26%)
		VHP	637..672	CDD:128458
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910