DRSC/TRiP Functional Genomics Resources

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Protein Alignment Bx and lims1

DIOPT Version :9

Sequence 1:NP_001259687.1 Gene:Bx / 32846 FlyBaseID:FBgn0265598 Length:424 Species:Drosophila melanogaster
Sequence 2:XP_012812021.1 Gene:lims1 / 100216119 XenbaseID:XB-GENE-967923 Length:397 Species:Xenopus tropicalis


Alignment Length:125 Identity:35/125 - (28%)
Similarity:60/125 - (48%) Gaps:7/125 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGN 152
            |..:|..|.:.|:.| ::.|:...||.:...|..|:...  :|...|.:..|..|:..|.:|||:
 Frog   252 GVPICGACRRPIEGR-VVNAMGKQWHVEHFVCAKCEKPF--LGHRHYERKGLAYCETHYNQLFGD 313

  Fly   153 TGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEE 212
            .  |..|::||..  .|:.|....:.:.||||..||.:..:..:|...:.|..|::.||:
 Frog   314 V--CFHCNRVIEG--DVVSALNKAWCVNCFACSTCNTKLTLKHKFVEIDLKPTCKHCYEK 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BxNP_001259687.1 LIM1_LMO1_LMO3 92..146 CDD:188774 13/53 (25%)
LIM2_dLMO 156..210 CDD:188776 15/53 (28%)
lims1XP_012812021.1 LIM1_PINCH 73..131 CDD:188717
LIM2_PINCH 134..185 CDD:188718
LIM3_PINCH 198..248 CDD:188719
LIM4_PINCH 254..307 CDD:188720 13/55 (24%)
LIM5_PINCH 315..368 CDD:188721 15/54 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1593918at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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