DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15042 and Rnf17

DIOPT Version :9

Sequence 1:NP_573308.1 Gene:CG15042 / 32844 FlyBaseID:FBgn0030937 Length:436 Species:Drosophila melanogaster
Sequence 2:XP_038949233.1 Gene:Rnf17 / 305908 RGDID:1310486 Length:1650 Species:Rattus norvegicus


Alignment Length:336 Identity:74/336 - (22%)
Similarity:121/336 - (36%) Gaps:113/336 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 LKKLPALTIKCRLVNV------------AQMHIFITQN---VRLRVLGSNGLELLVALIRNRTNI 224
            ||.:|.|...|.|.::            |::......|   |.::|.|.....|:|.|.:..|| 
  Rat   591 LKDIPHLAHLCSLKDIVPYNSSEGWEKEAKVEFLKMVNKKAVLMKVFGEEDDILIVDLQKPPTN- 654

  Fly   225 RKIPSAQLPPISGDEYGNMDANDREVAKSFARYR------------------PKRRERGSIVRVH 271
             || |:.:|         :...|..|....||:|                  |...|..:.|.|.
  Rat   655 -KI-SSDMP---------VSLRDALVFMELARFRSQSLRSHGENNTALCYRPPALPEEMTEVSVM 708

  Fly   272 VTRIVSHAEFYARFADGPTVPTWSKSVMKRGTGDFRVWDIVLAPYQ----------GRYHRAKIV 326
            |..|.|..:||.:..:.....:..|::.:...|:......:|.|.|          |.::|||::
  Rat   709 VCHINSPTDFYLQLMENLDFLSLLKTIEEFYKGEDGENLEILCPLQNQACVAKFEDGIWYRAKVI 773

  Fly   327 DIFRCR-YRVYFLDFGITEYTSKKNL-----TFCYELEKA-QHNLAF---------------RFE 369
            .:...| ..|.::|||.|...:.|::     .|....||| :..|||               :||
  Rat   774 GLPGHREVEVKYVDFGNTAKITLKDMRKIKDEFLEPPEKAIKCKLAFIEPSKRSHWSKKAKEKFE 838

  Fly   370 ILGTRRQ-----CPIPYINILEGIKHLEHTVL-----------RSDINVRIHNILKDG------G 412
               .:.|     |.:        ||.||:.||           .|.:::. ..::|:|      |
  Rat   839 ---EKTQDKFVTCSV--------IKILENGVLLVELFDSRAPGTSAVSIN-EQLVKEGLASYEAG 891

  Fly   413 YVIR--LMKHI 421
            |.::  ..||:
  Rat   892 YTLKDNSKKHL 902

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15042NP_573308.1 TUDOR 310..351 CDD:119391 14/51 (27%)
Rnf17XP_038949233.1 PHD_SF 30..72 CDD:419867
BBC 137..>242 CDD:128778
Tudor_TDRD4_rpt1 490..566 CDD:410485
Tudor_TDRD4_rpt2 728..823 CDD:410486 23/94 (24%)
Tudor_TDRD4_rpt3 968..1049 CDD:410487
Tudor_TDRD4_rpt4 1247..1314 CDD:410488
Tudor_TDRD4_rpt5 1504..1608 CDD:410489
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1525
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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