DRSC/TRiP Functional Genomics Resources

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Protein Alignment Xrcc2 and xrcc2

DIOPT Version :10

Sequence 1:NP_573302.1 Gene:Xrcc2 / 32837 FlyBaseID:FBgn0030931 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_001373407.1 Gene:xrcc2 / 553395 ZFINID:ZDB-GENE-121029-1 Length:314 Species:Danio rerio


Alignment Length:193 Identity:45/193 - (23%)
Similarity:81/193 - (41%) Gaps:18/193 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 FEAD------TLVEISGPGNSGKSLVLQQLVAHCLVPYKFGGRQWSVLLINLSHKINRESLAKSI 74
            |.||      .:||..|...|||:..|..|:..|:.|...||.:..|:.|:..:..:.......:
Zfish    44 FPADDGPGQGDVVEFHGMEGSGKTETLYHLITRCITPTHSGGLEVGVVFIDTDYHFDMLRFVSIL 108

  Fly    75 RMELKAYSVGEVIAAKCPTEEQLAEIAGECMSRVRFLNCFANDDVSTSLIDARYAIINDPGIQLV 139
            ...|...|       |..:|.:..|....|:.|:..::|.::..:..:|........:.|.:.|:
Zfish   109 EGRLAEDS-------KTGSENEAEETVRSCLCRLSVVHCNSSVQLLLTLHYLENTFSSQPTLGLL 166

  Fly   140 AMDTLSEFYWLDEPKIAKRMSMYR-HYRLLQARLEKLCKD-AIVCGMYTVESAFLENRFGENL 200
            .:|::|.|||.|.....:..|... :.|.....|::|.:: .||  ::....|.:.| ||.:|
Zfish   167 VIDSISAFYWTDRFNGGESASCQEANLRKCAELLDRLRRNYGIV--IFATTHAIMRN-FGSDL 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Xrcc2NP_573302.1 P-loop containing Nucleoside Triphosphate Hydrolases 21..>178 CDD:476819 35/157 (22%)
xrcc2NP_001373407.1 XRCC2 53..273 CDD:410898 42/184 (23%)

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