DRSC/TRiP Functional Genomics Resources

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Protein Alignment psh and gzmk

DIOPT Version :9

Sequence 1:NP_573297.1 Gene:psh / 32832 FlyBaseID:FBgn0030926 Length:394 Species:Drosophila melanogaster
Sequence 2:XP_017208551.1 Gene:gzmk / 794999 ZFINID:ZDB-GENE-091204-352 Length:267 Species:Danio rerio


Alignment Length:319 Identity:78/319 - (24%)
Similarity:119/319 - (37%) Gaps:88/319 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 NSTITSVSTSSTTSTK--APMTSGRVDVPTFGSGD-RPAVAACKKIRERKQQRSGNQLVIHIVGG 147
            ||..:.:...|.|..|  .|:.|   ||...|..| :.|::....|::.|         |||   
Zfish    12 NSFSSDLFVQSVTDFKISLPVCS---DVSIVGGKDVKKALSWMVSIQKEK---------IHI--- 61

  Fly   148 YPVDPGVYPHMAAIGYITFGTDFRCGGSLIASRFVLTAAHCVNTDANTPAFV-----------RL 201
                                    |||.||..::|||:|.|.....::...:           |:
Zfish    62 ------------------------CGGILIHKQWVLTSAQCKEVPVSSVTVLIGSLSLSKGSQRI 102

  Fly   202 GAVNIENPDHSYQDIVIRSVKIHPQYVGNKYNDIAILELERDVVETDNIRPACLHTDATDPPSNS 266
            |.:|.|.|....:.              .|.:||.::.|.:.|    ..:|..:..:..|.|..:
Zfish   103 GILNYEIPKTFNEK--------------TKEDDIMLIRLSKKV----KAKPYKIPKNEKDVPPGT 149

  Fly   267 KFFVAGWGVLNVTTRARSKILLRAGLELVPLDQCNISYAEQPGSIRLLKQGVIDSLLCAIDQKLI 331
            |..|.|||..:......|..|....:.:|..||||..|...|        .:...:|||.:.:..
Zfish   150 KCVVRGWGTTDYKDEQASDKLQMLEVLVVDRDQCNRYYNRNP--------VITKDMLCAGNTQQH 206

  Fly   332 ADACKGDSGGPLIHELNVEDGMYTIMGVISSGFGCA-TVTPGLYTRVSS-YLDFIEGIV 388
            ...|.|||||||..:.|       ::||||...||. ...|.:||.:|. ::.:|..|:
Zfish   207 RGTCWGDSGGPLECKKN-------LVGVISGSQGCGIPKKPTVYTFLSKRHISWINSIL 258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pshNP_573297.1 CLIP 30..79 CDD:197829
Tryp_SPc 143..384 CDD:214473 61/253 (24%)
Tryp_SPc 144..387 CDD:238113 61/255 (24%)
gzmkXP_017208551.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D476534at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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