DRSC/TRiP Functional Genomics Resources

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Protein Alignment psh and CG30083

DIOPT Version :10

Sequence 1:NP_573297.1 Gene:psh / 32832 FlyBaseID:FBgn0030926 Length:394 Species:Drosophila melanogaster
Sequence 2:NP_725492.3 Gene:CG30083 / 246444 FlyBaseID:FBgn0050083 Length:279 Species:Drosophila melanogaster


Alignment Length:257 Identity:89/257 - (34%)
Similarity:123/257 - (47%) Gaps:37/257 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 IVGGYPVDPGVYPHMAAIGYITFGTD-----FRCGGSLIASRFVLTAAHCVNTDANTPAFVRLGA 203
            |:.|...:.|..|.||   ||....|     ..|||:||..:|||:||||:..|....  |||| 
  Fly    34 IMHGQNAENGTNPWMA---YIFKYNDKEVAELVCGGTLIHKQFVLSAAHCIKRDQILA--VRLG- 92

  Fly   204 VNIENPDHSYQDIVIRSVKIHPQY--VGNKYNDIAILELERDVVETDNIRPACLHTDATDPPSNS 266
                  :||.......:.....:|  .|:..|||.||.::..|.....|||.|:.||.|..|:..
  Fly    93 ------EHSSSRYFAVTKAFRNKYFTTGSYSNDIGILRIQPIVKFNAVIRPICIITDPTKVPNVK 151

  Fly   267 KFFVAGWGVLNVTTRARSKILLRAGLELVPLDQCNISYAEQPGSIRLLKQGVIDSLLCAIDQKLI 331
            .|..||||  .......||:     |:.|.|::.|.|..     ..:|...|.:|.:||....  
  Fly   152 TFKAAGWG--KTENETFSKV-----LKTVELNELNASEC-----YNMLWVNVTESQICAGHPD-- 202

  Fly   332 ADACKGDSGGPLIHELNVEDGM-YTIMGVISSGFGCATVTPGLYTRVSSYLDFIEGIVWPDN 392
            .|.|.|||||||||.:.::..: |..:|:||.|..... :||:|||:||::|:|..:|  ||
  Fly   203 GDTCAGDSGGPLIHPVYMDGSLRYVQLGIISFGSSLCN-SPGVYTRLSSFIDWILMVV--DN 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pshNP_573297.1 CLIP 30..79 CDD:197829
Tryp_SPc 144..387 CDD:238113 86/250 (34%)
CG30083NP_725492.3 Tryp_SPc 34..255 CDD:238113 85/247 (34%)
Blue background indicates that the domain is not in the aligned region.

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