DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15056 and SKP2B

DIOPT Version :9

Sequence 1:NP_573291.1 Gene:CG15056 / 32824 FlyBaseID:FBgn0030918 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_001185415.1 Gene:SKP2B / 844036 AraportID:AT1G77000 Length:360 Species:Arabidopsis thaliana


Alignment Length:292 Identity:66/292 - (22%)
Similarity:108/292 - (36%) Gaps:88/292 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 APETSFSNLTYVSLR--RCQLNDENLVGWEFLTH-LETLDLRYNDRLTGSCLMSLP---TSLLSL 183
            ||:  |..|..:.||  :.||.|..:.......| |:.|||..:.::|...|.||.   |:|..|
plant    86 APK--FVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKL 148

  Fly   184 YITGCRNLCPNQLIFLNRIPR-------------------------LRELRASDLMPGGHWHIYR 223
            .::||.:.....|..|.|..|                         ..:|::.:|  |...:|..
plant   149 NLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNL--GWCENISD 211

  Fly   224 D----LVLACPLLVMVEISICSLNRDEYRLGELRYLQSLVIKAHSTDTIRCKVSDWMLISLLDVP 284
            |    |...||.|..:::..|.|..||          |:|..|:     ||     :.:..|.:.
plant   212 DGVMSLAYGCPDLRTLDLCSCVLITDE----------SVVALAN-----RC-----IHLRSLGLY 256

  Fly   285 FLRNL----MFSDAPSGFVSANALSIISRFRQLRVLKMPNQPYRPNDLLRLRNLTFLETLDLSNS 345
            :.||:    |:|.|.||..:.:.:     :|.::..|...:.              |.:|::|..
plant   257 YCRNITDRAMYSLAQSGVKNKHEM-----WRAVKKGKFDEEG--------------LRSLNISQC 302

  Fly   346 PYITNEVVIELVIGIPNLSV------LIVQGC 371
            .|:|...|..:....|.|..      |::.||
plant   303 TYLTPSAVQAVCDTFPALHTCSGRHSLVMSGC 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15056NP_573291.1 leucine-rich repeat 133..156 CDD:275381 6/24 (25%)
leucine-rich repeat 157..179 CDD:275381 8/24 (33%)
leucine-rich repeat 180..204 CDD:275381 7/23 (30%)
leucine-rich repeat 205..231 CDD:275381 7/29 (24%)
leucine-rich repeat 232..285 CDD:275381 11/52 (21%)
leucine-rich repeat 286..326 CDD:275381 9/43 (21%)
AMN1 306..>376 CDD:187754 13/72 (18%)
leucine-rich repeat 337..362 CDD:275381 6/24 (25%)
SKP2BNP_001185415.1 F-box 28..63 CDD:395521
leucine-rich repeat 66..91 CDD:275381 3/6 (50%)
leucine-rich repeat 92..118 CDD:275381 6/25 (24%)
AMN1 <115..264 CDD:187754 39/170 (23%)
leucine-rich repeat 119..144 CDD:275381 8/24 (33%)
leucine-rich repeat 145..170 CDD:275381 7/24 (29%)
leucine-rich repeat 171..197 CDD:275381 0/25 (0%)
leucine-rich repeat 198..223 CDD:275381 7/26 (27%)
leucine-rich repeat 224..249 CDD:275381 10/44 (23%)
leucine-rich repeat 250..272 CDD:275381 6/21 (29%)
leucine-rich repeat 294..319 CDD:275381 6/24 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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