DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15056 and VFB1

DIOPT Version :9

Sequence 1:NP_573291.1 Gene:CG15056 / 32824 FlyBaseID:FBgn0030918 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_175151.1 Gene:VFB1 / 841121 AraportID:AT1G47056 Length:518 Species:Arabidopsis thaliana


Alignment Length:378 Identity:80/378 - (21%)
Similarity:120/378 - (31%) Gaps:148/378 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 MFSHFEDFIRL---MSIRLTKVNEIALEGFQLTQYKWFNAPETSFSNLTYVSLRRC-QLNDENLV 149
            :||.|:...:|   ...|...:.:.||....|           ...||..:.||.| :|.|..:.
plant    96 LFSRFDSVTKLSLKCDRRSVSIGDEALVKISL-----------RCRNLKRLKLRACRELTDVGMA 149

  Fly   150 GW--------------------------EFLTHLETLDLRYNDRLTG---------------SCL 173
            .:                          :..::||.|.::   ||.|               |.|
plant   150 AFAENCKDLKIFSCGSCDFGAKGVKAVLDHCSNLEELSIK---RLRGFTDIAPEMIGPGVAASSL 211

  Fly   174 MSLPTSLLSLY--------ITGCRNLCPNQLIFLNRIPRLRELRASDLMPGGHWHIYRDLVLACP 230
            .|:  .|..||        |.|.:||           ..|:..|.|     |.|    ||:|.  
plant   212 KSI--CLKELYNGQCFGPVIVGAKNL-----------KSLKLFRCS-----GDW----DLLLQ-- 252

  Fly   231 LLVM-------VEISICSLNRDEYRLGELRYLQSLVIKAHSTDTIRCKVSDWMLISLLD-VPFLR 287
              .|       |||.:..:...:..|..:.|..||. ..|...|..|  :::.|.::.: ...||
plant   253 --EMSGKDHGVVEIHLERMQVSDVALSAISYCSSLE-SLHLVKTPEC--TNFGLAAIAEKCKRLR 312

  Fly   288 NLMFSDAPSGFVSANALSIISRF-RQLRVLKMPNQPYRPNDL---------LRLRNL------TF 336
            .|......:..:....|..:::| .||:.|.:..  ..|..|         |.|..|      ||
plant   313 KLHIDGWKANLIGDEGLVAVAKFCSQLQELVLIG--VNPTTLSLGMLAAKCLNLERLALCGCDTF 375

  Fly   337 --------------LETLDLSNSPYITNEVVIELVIGIPNLSVLIVQGCPLLT 375
                          |..|.:.|.| |::       :||.||:    .|||.||
plant   376 GDPELSCIAAKCPALRKLCIKNCP-ISD-------VGIENLA----NGCPGLT 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15056NP_573291.1 leucine-rich repeat 133..156 CDD:275381 6/49 (12%)
leucine-rich repeat 157..179 CDD:275381 9/36 (25%)
leucine-rich repeat 180..204 CDD:275381 7/31 (23%)
leucine-rich repeat 205..231 CDD:275381 8/25 (32%)
leucine-rich repeat 232..285 CDD:275381 12/60 (20%)
leucine-rich repeat 286..326 CDD:275381 8/40 (20%)
AMN1 306..>376 CDD:187754 25/100 (25%)
leucine-rich repeat 337..362 CDD:275381 7/24 (29%)
VFB1NP_175151.1 F-box-like 41..>70 CDD:403981
AMN1 87..>202 CDD:187754 21/119 (18%)
leucine-rich repeat 103..125 CDD:275381 4/21 (19%)
leucine-rich repeat 132..157 CDD:275381 6/24 (25%)
leucine-rich repeat 158..182 CDD:275381 0/23 (0%)
leucine-rich repeat 183..224 CDD:275381 12/45 (27%)
leucine-rich repeat 235..260 CDD:275381 10/48 (21%)
leucine-rich repeat 261..284 CDD:275381 5/22 (23%)
AMN1 271..>412 CDD:187754 32/157 (20%)
leucine-rich repeat 285..310 CDD:275381 5/27 (19%)
leucine-rich repeat 311..338 CDD:275381 5/26 (19%)
leucine-rich repeat 339..363 CDD:275381 4/25 (16%)
leucine-rich repeat 364..389 CDD:275381 4/24 (17%)
leucine-rich repeat 390..414 CDD:275381 11/35 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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