DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG15056 and SLOMO

DIOPT Version :9

Sequence 1:	NP_573291.1	Gene:	CG15056 / 32824	FlyBaseID:	FBgn0030918	Length:	399	Species:	Drosophila melanogaster
Sequence 2:	NP_567916.2	Gene:	SLOMO / 829457	AraportID:	AT4G33210	Length:	990	Species:	Arabidopsis thaliana

Alignment Length:	365	Identity:	83/365 - (22%)
Similarity:	122/365 - (33%)	Gaps:	123/365 - (33%)

- Green bases have known domain annotations that are detailed below.

  Fly    98 RLMSIRLT---KVNEIALEGFQLTQYKWFNAPETSFSNLTYVSLRRCQL-NDENLVGWEFLTH-L 157
            ||.||.|.   |..::.|:...|:.....|.|......:|..:|||..| ..|||.......| |
plant   489 RLQSISLVHCRKFTDLNLQSIMLSSITVSNCPALRRITITSNALRRLALQKQENLTTLVLQCHSL 553

  Fly   158 ETLDLRYNDRLT----------GSC--LMSL--------------PTSLLSLYITGCRNL----- 191
            :.:||...:.|:          |.|  |.||              .:||.||.:.|||.:
plant   554 QEVDLSDCESLSNSVCKIFSDDGGCPMLKSLILDNCESLTAVRFCNSSLASLSLVGCRAVTSLEL 618

  Fly   192 -CPN-----------------QLIFLNRI-----PRLRELR-------ASDLMPGGHWHIYRDLV 226
             ||.                 |.:.|..:     |:|..|.       :.:|...|   :..:..
plant   619 KCPRIEQICLDGCDHLETAFFQPVALRSLNLGICPKLSVLNIEAPYMVSLELKGCG---VLSEAS 680

  Fly   227 LACPLLVMVEISICSLNRDEYRLGELRYLQSLVIKAHSTDTIRCKVSDWMLISLLDVPFLRNLMF 291
            :.||||..::.|.||..||:               ..|..|..|             |.:.:|:.
plant   681 IMCPLLTSLDASFCSQLRDD---------------CLSATTASC-------------PLIESLVL 717

  Fly   292 SDAPS----GFVSANAL-----------------SIISRFRQLRVLKMPNQPYRPND----LLRL 331
            ...||    |..|.|.|                 .:.....||:|||:....|..:.    |.:.
plant   718 MSCPSIGSDGLSSLNGLPNLTVLDLSYTFLMNLEPVFKSCIQLKVLKLQACKYLTDSSLEPLYKE 782

  Fly   332 RNLTFLETLDLSNSPYITNEVVIELVIGIPNLSVLIVQGC 371
            ..|..||.||||... :....:.:|:....:|:.|.:.||
plant   783 GALPALEELDLSYGT-LCQTAIDDLLACCTHLTHLSLNGC 821

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG15056	NP_573291.1	leucine-rich repeat	133..156	CDD:275381	8/23 (35%)
		leucine-rich repeat	157..179	CDD:275381	9/47 (19%)
		leucine-rich repeat	180..204	CDD:275381	10/51 (20%)
		leucine-rich repeat	205..231	CDD:275381	5/32 (16%)
		leucine-rich repeat	232..285	CDD:275381	9/52 (17%)
		leucine-rich repeat	286..326	CDD:275381	13/60 (22%)
		AMN1	306..>376	CDD:187754	19/70 (27%)
		leucine-rich repeat	337..362	CDD:275381	7/24 (29%)
SLOMO	NP_567916.2	F-box-like	195..234	CDD:372399
		leucine-rich repeat	208..257	CDD:275381
		leucine-rich repeat	258..282	CDD:275381
		leucine-rich repeat	283..306	CDD:275381
		leucine-rich repeat	307..326	CDD:275381
		leucine-rich repeat	331..350	CDD:275381
		AMN1	344..523	CDD:187754	10/33 (30%)
		leucine-rich repeat	371..396	CDD:275381
		leucine-rich repeat	397..422	CDD:275381
		leucine-rich repeat	423..443	CDD:275381
		leucine-rich repeat	444..468	CDD:275381
		leucine-rich repeat	469..489	CDD:275381	83/365 (23%)
		leucine-rich repeat	490..521	CDD:275381	8/30 (27%)
		AMN1	<516..660	CDD:187754	34/143 (24%)
		leucine-rich repeat	522..552	CDD:275381	8/29 (28%)
		leucine-rich repeat	602..622	CDD:275381	7/19 (37%)
		leucine-rich repeat	623..643	CDD:275381	1/19 (5%)
		leucine-rich repeat	644..664	CDD:275381	4/19 (21%)
		AMN1	682..>826	CDD:187754	39/169 (23%)
		leucine-rich repeat	686..711	CDD:275381	9/52 (17%)
		leucine-rich repeat	712..731	CDD:275381	4/18 (22%)
		leucine-rich repeat	737..759	CDD:275381	0/21 (0%)
		leucine-rich repeat	760..787	CDD:275381	7/26 (27%)
		leucine-rich repeat	788..812	CDD:275381	7/24 (29%)
		leucine-rich repeat	906..951	CDD:275381
		leucine-rich repeat	952..977	CDD:275381
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1947
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1282076at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.820