DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG15056 and Fbxl22

DIOPT Version :9

Sequence 1:NP_573291.1 Gene:CG15056 / 32824 FlyBaseID:FBgn0030918 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_780415.1 Gene:Fbxl22 / 74165 MGIID:1921415 Length:236 Species:Mus musculus


Alignment Length:183 Identity:45/183 - (24%)
Similarity:69/183 - (37%) Gaps:62/183 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 LMPGGHWHIYRDLVLACPLLVMVEISICSLNRDEYRLGELRYLQSLVIKAHSTDTIRCKVSDWML 277
            |.|..|:|                 |:..|.:|.:||...  |:||.|..||:....|.:.||: 
Mouse    42 LWPLLHFH-----------------SLAELKKDNFRLSPA--LRSLSICWHSSRVQVCSIEDWL- 86

  Fly   278 ISLLDVPFLRNLMFSDAPSGFVSANALSIISRFRQLRVLKMPNQPYRPNDLL-----RLRNLTFL 337
                                 .||...||.|:...|           .||.|     |..|||  
Mouse    87 ---------------------KSALQRSICSQHESL-----------VNDFLLQVCNRCPNLT-- 117

  Fly   338 ETLDLSNSPYITNEVVIELVIGIPNLSVLIVQGCPLLTNRVYLDAELASKKRS 390
             ::.||...::|::.:..|::..|.|..|.::.|..:|||..  |.:|:..|:
Mouse   118 -SVTLSGCGHVTDDCLARLLLSCPRLRTLRLENCARVTNRTL--AAVAAHGRA 167

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG15056NP_573291.1 leucine-rich repeat 133..156 CDD:275381
leucine-rich repeat 157..179 CDD:275381
leucine-rich repeat 180..204 CDD:275381
leucine-rich repeat 205..231 CDD:275381 4/17 (24%)
leucine-rich repeat 232..285 CDD:275381 14/52 (27%)
leucine-rich repeat 286..326 CDD:275381 6/39 (15%)
AMN1 306..>376 CDD:187754 18/74 (24%)
leucine-rich repeat 337..362 CDD:275381 4/24 (17%)