DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15056 and skp2

DIOPT Version :10

Sequence 1:NP_573291.1 Gene:CG15056 / 32824 FlyBaseID:FBgn0030918 Length:399 Species:Drosophila melanogaster
Sequence 2:XP_068072015.2 Gene:skp2 / 563708 ZFINID:ZDB-GENE-030219-158 Length:510 Species:Danio rerio


Alignment Length:373 Identity:82/373 - (21%)
Similarity:127/373 - (34%) Gaps:116/373 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LDVLKQLDLKSRISFAASC------DMFENIYVRSS---PLRLSRVVNLEEMIEF--SLLETKLF 70
            |.||.:...|.|.|.|..|      ::...|:.|.|   .||.|||......:.|  ||..:   
Zfish   169 LFVLARRPRKRRESSANLCWDSLPDELLLGIFSRLSLQDLLRTSRVCKRWHRLAFDESLWHS--- 230

  Fly    71 VELSGS---DIE---IIRGG------PHT----PMFSHFEDFIRLMSIRLTKVNEIALEGFQLTQ 119
            |:|.|.   |.|   ::..|      |||    |.|.      ...|:|:..::           
Zfish   231 VDLVGKAQLDAELGQVLSAGVLRLRCPHTCIGQPSFK------STPSLRVQHLD----------- 278

  Fly   120 YKWFNAPETSFSNLTYVS------LRRCQLNDENLVGWEFLTHLETLDLR---YNDRLTGSCLMS 175
                      |||.|..:      |.||:             ||:.|.|.   .:|.:..|  ::
Zfish   279 ----------FSNCTVETSVLEDVLSRCK-------------HLQNLSLEGLVLSDNIIYS--LA 318

  Fly   176 LPTSLLSLYITGCRNLCPNQLI-FLNRIPRLRELRASDLMPGGHWHIYRDLVLACPLLVMVEISI 239
            ....::.|.:.||....|..|. .|....|:.|:..|       |..:.:|.:.. :...:..|:
Zfish   319 QNPEIIRLNLCGCSGFSPESLTEMLTACTRIEEMNVS-------WCDFSNLHIQA-IASNIPSSV 375

  Fly   240 CSLNRDEYRLGELRYLQSLVIKAHSTDTIRCKVSDWMLISLLDVPFLRNLMFSDAPSGFVSANAL 304
            ..||...||       |:|.::.......||             |.:.:|..||  |..|:.::.
Zfish   376 SQLNISGYR-------QNLTMEDVKAIVKRC-------------PNITDLDLSD--SVLVTTDSF 418

  Fly   305 SIISRFRQLRVLKMPN----QPYRPNDLLRLRNLTFLETLDLSNSPYI 348
            .::.:...||.|.:..    .|....|..:..||..||...|....|:
Zfish   419 PVLQQLSSLRHLGLSRCYQIHPASLIDFEKFLNLQTLEVFGLIQDSYL 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15056NP_573291.1 leucine-rich repeat 133..156 CDD:275381 4/28 (14%)
leucine-rich repeat 157..179 CDD:275381 5/24 (21%)
leucine-rich repeat 180..204 CDD:275381 6/24 (25%)
leucine-rich repeat 205..231 CDD:275381 4/25 (16%)
leucine-rich repeat 232..285 CDD:275381 9/52 (17%)
leucine-rich repeat 286..326 CDD:275381 9/43 (21%)
AMN1 306..>376 CDD:187754 11/47 (23%)
leucine-rich repeat 337..362 CDD:275381 4/12 (33%)
skp2XP_068072015.2 None

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