DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15056 and Amn1

DIOPT Version :9

Sequence 1:NP_573291.1 Gene:CG15056 / 32824 FlyBaseID:FBgn0030918 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_001008334.2 Gene:Amn1 / 302032 RGDID:1308119 Length:258 Species:Rattus norvegicus


Alignment Length:355 Identity:69/355 - (19%)
Similarity:131/355 - (36%) Gaps:126/355 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 SRVVNLEEMIEFSLLETKLFVELSG--SDIEIIRGGPHTPMFSHFEDFIRLMSI--RLT--KVNE 109
            ||||:  :::|..|  ..|.:.:|.  |||:.:     .|...  :..|::||:  |:|  .:||
  Rat     4 SRVVS--QLLELCL--RCLIINISRYISDIKYL-----PPNIK--DRLIKIMSMRGRITDSNINE 57

  Fly   110 IALEGFQLTQYKWFNAPETSFSNLTYVSLRRCQLNDENLVGWEFLTHLETLDLR----YNDRLTG 170
            :.             .||     :..:.||.|.::|..|........|:.|:|:    :.:.:|.
  Rat    58 VL-------------HPE-----VQRLDLRSCNISDVALQHLCKCRKLKALNLKSCREHRNSITS 104

  Fly   171 SCLMSLPTSLLSLY---ITGCRNLCPNQLIFLNRIPRLRELRASDLMPGGHWHIYRDLVLACPLL 232
            ..:.::.:|...|:   :.||.::....::                          .|.|.|.||
  Rat   105 EGIKAVASSCSDLHEISLKGCCSVTDEGVL--------------------------ALALNCQLL 143

  Fly   233 VMVEISICSLNRDE--YRLGELRYLQSLVIKAHSTDTIRCKVSDWMLISLLDVPFLRNLMFSDAP 295
            .::::..|....||  :.||:                              :.|||:.:.||...
  Rat   144 KIIDLGGCLSITDESLHALGK------------------------------NCPFLQCVDFSTTQ 178

  Fly   296 SGFVSANALSIISRFRQLRVLKMPNQPYRPNDLLRLRNLTFLETLDLSNSPYITNEVVIELVIGI 360
               ||.|.           |:.:.:.|....          ||.:::.....:|::.|...:...
  Rat   179 ---VSDNG-----------VVALVSGPCAKQ----------LEEINMGYCINLTDKAVEAALTAC 219

  Fly   361 PNLSVLIVQGCPLLT--NRVYLDAELASKK 388
            |.:.:|:..||||:|  :|..|:..:.|:|
  Rat   220 PQICILLFHGCPLITDHSREVLEQLIGSRK 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15056NP_573291.1 leucine-rich repeat 133..156 CDD:275381 5/22 (23%)
leucine-rich repeat 157..179 CDD:275381 4/25 (16%)
leucine-rich repeat 180..204 CDD:275381 3/26 (12%)
leucine-rich repeat 205..231 CDD:275381 3/25 (12%)
leucine-rich repeat 232..285 CDD:275381 6/54 (11%)
leucine-rich repeat 286..326 CDD:275381 8/39 (21%)
AMN1 306..>376 CDD:187754 13/71 (18%)
leucine-rich repeat 337..362 CDD:275381 4/24 (17%)
Amn1NP_001008334.2 leucine-rich repeat 10..35 CDD:275381 7/31 (23%)
leucine-rich repeat 36..58 CDD:275381 6/23 (26%)
AMN1 37..257 CDD:187754 57/313 (18%)
leucine-rich repeat 63..86 CDD:275381 5/22 (23%)
leucine-rich repeat 87..116 CDD:275381 5/28 (18%)
leucine-rich repeat 117..142 CDD:275381 6/50 (12%)
leucine-rich repeat 143..168 CDD:275381 6/54 (11%)
leucine-rich repeat 169..195 CDD:275381 8/39 (21%)
leucine-rich repeat 196..221 CDD:275381 4/24 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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