DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment betaCOP and ap1b1

DIOPT Version :9

Sequence 1:NP_523400.1 Gene:betaCOP / 32820 FlyBaseID:FBgn0008635 Length:964 Species:Drosophila melanogaster
Sequence 2:XP_009299618.1 Gene:ap1b1 / 562166 ZFINID:ZDB-GENE-061025-1 Length:995 Species:Danio rerio


Alignment Length:1048 Identity:197/1048 - (18%)
Similarity:347/1048 - (33%) Gaps:279/1048 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 QLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVLPVQNHTIKKLLLIFWEIVPKTS 87
            :||.:|.......|.|.:|:||..:..|:....|...::. .:...|..:|||:.::.....|:.
Zfish    33 ELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVN-CMQTDNLELKKLVYLYLMNYAKSQ 96

  Fly    88 ADGKLLQEMILVCDAYRKDLQHPNEFLRGSTLRFLCKLKEPELLEPLMPAIRACLDHRHSYVRRN 152
            .|     ..|:..:.:.||.:.||..:|...:|.:..::..::.|.|...:|.||.....|||:.
Zfish    97 PD-----MAIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKT 156

  Fly   153 AVLAIFTIYKNFDWLVPDGPELIASFLDTQQDMSCKRNAFLM------------------LLHAD 199
            |.:.:..::.....||.|     ..||||.:|:....|..::                  ||..:
Zfish   157 AAVCVAKLHDINAQLVED-----QGFLDTLKDLISDSNPMVVANAVAALSEIAESHPNSNLLDLN 216

  Fly   200 QERALNYLASCIDQVHTFGDIL----------------QLVIVELIYKVCHANPAERSRFIRCIY 248
            .: .:|.|.:.:::...:|.|.                |.:...:..::.|||.|.....::.:.
Zfish   217 PQ-TINKLLTALNECTEWGQIFILDCLANYTPRDDRESQSICERVTPRLSHANSAVVLSAVKVLM 280

  Fly   249 NLLNSSSNAVRYESAGTLITLSLAP---TAIKAAASC-YIELVVKESDNNVKLIVLDRLVAMKEH 309
            ..:......:.|  .|||:. .|||   |.:.|.... |:.|      .|:.|||..|...:| |
Zfish   281 KFMEMLPKDLDY--YGTLLK-KLAPPLVTLLSAEPELQYVAL------RNINLIVQKRPEILK-H 335

  Fly   310 EGMEKVMQDLVMDVLRVLAAPDIEVRRKTLALALDLVYSRNIGEMVLVLKKEVAKTHNVEHEDTG 374
            |          |.|..|.....|.|:.:.|.:.:.|....||.: ||...||.|...:|:     
Zfish   336 E----------MKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ-VLAELKEYATEVDVD----- 384

  Fly   375 KYRQLLVRTLHTCSIKFPDVAANVIPVLVEFLSDTNELAAADVLIFIREAIQKFPALRALIIEHL 439
             :.:..||.:..|:||....|...:..|::.:.........:.::.|::..:|:|.....:|..|
Zfish   385 -FVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIKDIFRKYPNKYESVIATL 448

  Fly   440 IEAFPQIKSSKIHRAAVWILGEYVE----GSQILEVIAV---IQQTLGEVPMVEAEQRRLAGDQT 497
            .|....:...:...|.:||:|||.|    ..::||....   .:.|..::.::.|..:......|
Zfish   449 CENLDSLDEPEARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLQLLTAIVKLFLKKPT 513

  Fly   498 EEQKQQQGSAGGNAAGSAAEGSGSGNASNKVTSDGTYATQSAYSLAPVAKAE----KRPPLRQYL 558
            |.|:..|     .....|.:.|     .|....|..|......|..|||..|    ::|.:.:  
Zfish   514 ETQELVQ-----QVLSLATQDS-----DNPDLRDRGYIYWRLLSTDPVAAKEVVLAEKPLISE-- 566

  Fly   559 MDGDFFIGAALSATLTKLALRYAELETEARAQNRLTTQVMLI--MSSILHLGKSGF--------- 612
                                     ||:......|...:..|  ::|:.|...|.|         
Zfish   567 -------------------------ETDLIEPTLLDELICHIGTLASVYHKPPSAFVEGSRGVQH 606

  Fly   613 ---PSKPITNDDTDRIFVCLRTLSERTPEAISVFTLYCREALGKMLDAQHDEDQRMLKEKQKATA 674
               |::..:.:..:...|.....||..|..|.    ...:.||.:|:..       |........
Zfish   607 KRLPARAGSGESAESPEVGQSGTSEAPPAVIP----SQGDLLGDLLNLD-------LAPATTTVP 660

  Fly   675 KVQPDDPV-LFAQLSNGRDNQLGE--------------------NVFESSLNQALAGSKN----- 713
            .|||...: ....|..|.|:.:|:                    :..|..|...:.||.:     
Zfish   661 SVQPSMQMGAMDLLGGGLDSLMGDESDTPGVSHRTEMQSPQPSSDYSERELGGDIGGSPSMGAAL 725

  Fly   714 -------AQLSDVASPNSKLNKVTQLTG---------------FSDPVYAEAYVNVNQYD----- 751
                   |.||:..:....|..:..|.|               |...:.|:.......:.     
Zfish   726 GAPAAMPAALSNAPAVGGGLGDLFDLGGGVGMPTGFYVAPKTLFLPAMKAKGLEISGTFARRGGI 790

  Fly   752 IVLDVLIVNQTNDTLQNCTLE-------LATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTEN 809
            |.:|:.:.|:....:.:..::       ||..|.|:::     ..|.|:.  .|..::.:.:|  
Zfish   791 IQMDLSLTNKAMSVMTDFAIQFNRNSFGLAPAGPLQVL-----TPLTPNQ--TIDVSLPLGTT-- 846

  Fly   810 GIIFGNIV-YETALNTNVVVLNTIHIDIMDYIIPASCTDTE--------FRQMWQDFEWENKV-- 863
                |.:: .|...|..|.|.|.|.:.......|.|....|        |...|:|...:|:.  
Zfish   847 ----GPVMKMEPLNNLQVAVKNNIDVFYFSCQYPLSLLFVEDGKMERQVFLATWKDIPNDNEAQF 907

  Fly   864 ----------------------TVNTSFTDLHEYLKHLLKSTN---------------------- 884
                                  |:.....|..:.|...:|.||                      
Zfish   908 QIKDVHLNSDAASNKLQGSNIFTIAKRTVDAQDMLYQSIKLTNGIWVLAEMRVQTGNPNYTEMEL 972

  Fly   885 -MKCLTPE 891
             :||..||
Zfish   973 SIKCRAPE 980

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaCOPNP_523400.1 Adaptin_N 17..562 CDD:279882 125/587 (21%)
Coatamer_beta_C 678..820 CDD:285019 29/202 (14%)
Coatomer_b_Cpla 826..953 CDD:291472 21/121 (17%)
ap1b1XP_009299618.1 Adaptin_N 27..550 CDD:279882 120/565 (21%)
HEAT repeat 67..91 CDD:293787 4/24 (17%)
HEAT repeat 103..130 CDD:293787 6/26 (23%)
Cnd1 115..284 CDD:289487 32/174 (18%)
HEAT repeat 137..167 CDD:293787 8/29 (28%)
HEAT repeat 176..202 CDD:293787 6/25 (24%)
HEAT repeat 213..244 CDD:293787 5/31 (16%)
HEAT repeat 371..395 CDD:293787 7/29 (24%)
HEAT repeat 407..435 CDD:293787 2/27 (7%)
HEAT repeat 443..474 CDD:293787 9/30 (30%)
HEAT repeat 480..506 CDD:293787 4/25 (16%)
Alpha_adaptinC2 772..872 CDD:197886 19/112 (17%)
B2-adapt-app_C 881..994 CDD:198088 15/100 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5096
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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