Protein Alignment betaCOP and elav

DIOPT Version :9

• Sequence 1: NP_523400.1
• Gene: betaCOP / 32820
• FlyBaseID: FBgn0008635
• Length: 964
• Species: Drosophila melanogaster
• Sequence 2: NP_001245447.1
• Gene: elav / 31000
• FlyBaseID: FBgn0260400
• Length: 483
• Species: Drosophila melanogaster
• Alignment Length: 476
• Identity: 84/476 - (17%)
• Similarity: 156/476 - (32%)
• Gaps: 157/476 - (32%)

  Fly   440 IEAFPQIKSSKIHRAAVWILGEYVEGSQILEVIAVIQQTLGEVPMVEAEQRRLAGDQTEEQKQQQ 504
            :.|..|::..::.:|.:.:..:..:.:......||.||       ::.:|:.:...|...|:|||
  Fly    46 VAAAAQLQQQQVQQAILQVQQQQTQQAVAAAAAAVTQQ-------LQQQQQAVVAQQAVVQQQQQ 103

  Fly   505 GSAG-------------------GNAAGSAAEGSGSGNASNKVTSDGTYATQSAYSLAPVAKAEK 550
            .:|.                   .|..|:|  ||||.|.||..|.
  Fly   104 QAAAVVQQAAVQQAVVPQPQQAQPNTNGNA--GSGSQNGSNGSTE-------------------- 146

  Fly   551 RPPLRQYLMDGDFFIGAALSATLTKLALRYAELETEARAQNRLTTQVMLIMSSILHLGKSGFPSK 615
                                 |.|.|.:.|.       .|.....::..:.||:     ....|.
  Fly   147 ---------------------TRTNLIVNYL-------PQTMTEDEIRSLFSSV-----GEIESV 178

  Fly   616 PITNDDTDRIFVCLRTLSERTP---EAISV-FTLYCREALGKMLDAQHDEDQRMLKEKQKATAKV 676
            .:..|.:.   |.:..|:.:.|   :::.. |..|.|..     ||:...:.......|..|.||
  Fly   179 KLIRDKSQ---VYIDPLNPQAPSKGQSLGYGFVNYVRPQ-----DAEQAVNVLNGLRLQNKTIKV 235

  Fly   677 QPDDPVLFAQLSNGRDNQLGENVFESSLNQALAGSKNAQLSDVASPNSKL--NKVTQLTGFSDPV 739
            .      ||:.|:  |...|.|::.|.|.:.:.   ..:|..:.:|...:  :::.|..|.....
  Fly   236 S------FARPSS--DAIKGANLYVSGLPKTMT---QQELEAIFAPFGAIITSRILQNAGNDTQT 289

  Fly   740 YAEAYVNVNQYDIVLDVLI-VNQTNDTLQNCTLELA-----TLGDL-KLVERPHPVVLAPHDFCN 797
            ....::..::.:.....:| :|.|  |..:||..:.     |.|.. |:::...|..|.|.....
  Fly   290 KGVGFIRFDKREEATRAIIALNGT--TPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRR 352

  Fly   798 IKANVKVSSTENGIIFGNIVYETALNTNVVVLNTIHIDIMDYIIP-------ASCT--------- 846
            |               |..:: |.:|..:...:.:..|::|.::|       |:.|
  Fly   353 I---------------GGAMH-TPVNKGLARFSPMAGDMLDVMLPNGLGAAAAAATTLASGPGGA 401

  Fly   847 ----------DTEFRQMWQDF 857
                      :||...:||.|
  Fly   402 YPIFIYNLAPETEEAALWQLF 422

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
betaCOP	NP_523400.1	Adaptin_N	17..562	CDD:279882	25/140 (18%)
		Coatamer_beta_C	678..820	CDD:285019	26/150 (17%)
		Coatomer_b_Cpla	826..953	CDD:291472	10/58 (17%)
elav	NP_001245447.1	ELAV_HUD_SF	146..483	CDD:273741	59/367 (16%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	1	0.950	-	0	Normalized mean entropy	S39
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.950