DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment betaCOP and apb-3

DIOPT Version :9

Sequence 1:NP_523400.1 Gene:betaCOP / 32820 FlyBaseID:FBgn0008635 Length:964 Species:Drosophila melanogaster
Sequence 2:NP_492170.2 Gene:apb-3 / 172553 WormBaseID:WBGene00000163 Length:945 Species:Caenorhabditis elegans


Alignment Length:859 Identity:156/859 - (18%)
Similarity:310/859 - (36%) Gaps:191/859 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTSQVPCYTIINSPDLEV----------TNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPG 55
            |||.|...|   ||::|:          |....||..|:....|:|::.:||:|.|:..|:....
 Worm     1 MTSFVEGLT---SPEMEIAEGGVILDNRTRFADLKAMLDSNKDNLKVDAMKRIINLIAKGKDVSE 62

  Fly    56 LIMTIIRFVLPVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILVCDAYRKDLQHPNEFLRGSTLR 120
            |...:::.| ..:|..:|||:.::.....:...|..||.     ...:::.|:.||:.:|||.||
 Worm    63 LFAAVVKNV-AAKNVELKKLVFVYLVRYAEEQQDLALLS-----ISTFQRALKDPNQLIRGSALR 121

  Fly   121 FLCKLKEPELLEPLMPAIRACLDHRHSYVRRNAVLAIFTIYK-----------NFDWLVPDGPEL 174
            .|..::.|.:...::.||:..:.....|||:.|..||..:|.           ..|:|:.|...|
 Worm   122 VLTSIRVPMVAPIMLLAIKDAVRDMSPYVRKVAAHAIPKLYSLEPELEPQLVDCIDFLLADRRSL 186

  Fly   175 IASFLDTQQDMSCKRNAFLMLLHADQERALNYLASC--IDQVHTFGDILQLVIVELIYKVCH--- 234
            :........|..|...  |.|||.      ::.|.|  :..|..:|   |:|::.::.:...   
 Worm   187 VLGSAVYAFDEICPHR--LDLLHK------HFRALCRGLADVDEWG---QIVMINMLTRYARHEL 240

  Fly   235 ANPAERSRFIRCIYNLLNSSSNAVRYESAGTLITL-----SLAPTA-IKAAASCYIELVVKESDN 293
            |:| :|......:..||||:...::..:...::.:     .:||.| :...|...:.|:  ....
 Worm   241 ADP-DRGPPDTDVVLLLNSARPLLQSRNCSVVMAVVQLFYHVAPKAQLSQIARALVRLL--RGPR 302

  Fly   294 NVKLIVLDRLVAMKEHEGME-------KVMQDLVMDVLRVLAAPDIEVRRKTLALALDLVYSRNI 351
            ..:.:||..:..:.|...:|       |.|.|..:....|.:.....|::..|.:...||...|:
 Worm   303 ETQYVVLTNIATICERNPVEEGTYAISKTMFDPFLKSFFVRSCDSSLVKKLKLHVLTSLVSEANV 367

  Fly   352 GEMVLVLKKEVAKTHNVEHEDTGKYRQLLVRTLHTCSIKFPDVAANVIPVLVEFLSDTNELAAAD 416
            .   ::|::.....|..:.....      |..:..|:::...|:...:..||:.:|.::|.....
 Worm   368 H---IILRELQTYVHMSDLASPA------VEAIGRCAVRVGAVSDQCMTGLVQLISSSDEKVVCS 423

  Fly   417 VLIFIREAIQKFPALRALIIEHLIEAFPQIKSSKIHRAAVWILGEYVE-----GSQILEVIAVIQ 476
            .::.|:..:.....|.  ::..|:...|.:.:::.....:|::..:||     ....|.:||...
 Worm   424 AVVVIKRLLHASAPLN--LLSRLMRLMPNMIAAQARACVIWLVATHVEQVLHMAPDFLRLIAKKF 486

  Fly   477 QTLGEVPMVEAEQRRLA-------GDQTEEQKQQQGSAGGNAAGSAAEGSGSGNASNKVTSDGTY 534
            .|..|  :|:.|..:||       .|.:|:..|.                    .......|.:|
 Worm   487 STENE--LVKLEALKLAVKLWLVKRDDSEKIVQY--------------------VFQLARFDLSY 529

  Fly   535 ATQS---------------AYSLAPVAKAEK-RPPLRQYLMDGDFFIGAALSATLTKLALRYAEL 583
            ..:.               :..:..:..::| .|.|.....:.|.|...:||..|.:...:|.:|
 Worm   530 DVRDRCRFLRNLMFNTEILSQHMEEIFMSKKPAPELISSFKERDKFQLGSLSHVLNQRCTKYIDL 594

  Fly   584 ETEARAQNRLTTQVMLIMSSILHLGKSGFPSKPITNDDTDRIFVCLRTLSERTPEAISVFTLYCR 648
                                         |..|.|:.|:      |.......|..:        
 Worm   595 -----------------------------PEFPATSSDS------LLRKEAHAPNEL-------- 616

  Fly   649 EALGKMLDAQHDEDQRMLKEKQKATAKVQPDDPVLFAQLSNGRDNQLGENVFESSLNQALAGSKN 713
                |:.|:..:||.....|::....:.:.:|.....:..|..:.:..::..|.|..::....:.
 Worm   617 ----KLDDSDEEEDDDDEDEEEDEDEEEEDEDEEDEEEEENESEEEEEDDEDEESEEESDEEDEE 677

  Fly   714 AQLSDVASPNSKLN------KVTQLTGFSDPVYAEAYVNVNQYDIVLDVLIVNQTNDTLQNCTLE 772
            .:..|.:.|..|.|      |...:...|.|:..:.....|..|:::||               :
 Worm   678 EEEEDDSEPEEKPNPKPSTKKQALILNKSKPMNGKPKTERNDLDLLIDV---------------D 727

  Fly   773 LATLGDLKLVERPH 786
            .:..|..::::..|
 Worm   728 FSAAGSRQIMDATH 741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaCOPNP_523400.1 Adaptin_N 17..562 CDD:279882 114/611 (19%)
Coatamer_beta_C 678..820 CDD:285019 17/115 (15%)
Coatomer_b_Cpla 826..953 CDD:291472
apb-3NP_492170.2 Adaptin_N 23..546 CDD:279882 110/575 (19%)
Motor_domain <35..84 CDD:277568 14/49 (29%)
HEAT repeat 100..128 CDD:293787 9/32 (28%)
HEAT repeat 134..162 CDD:293787 8/27 (30%)
HEAT repeat 171..197 CDD:293787 4/25 (16%)
AP3B1_C <740..826 CDD:291462 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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