DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment betaCOP and AP2B1

DIOPT Version :9

Sequence 1:NP_523400.1 Gene:betaCOP / 32820 FlyBaseID:FBgn0008635 Length:964 Species:Drosophila melanogaster
Sequence 2:XP_011522750.1 Gene:AP2B1 / 163 HGNCID:563 Length:983 Species:Homo sapiens


Alignment Length:1074 Identity:206/1074 - (19%)
Similarity:356/1074 - (33%) Gaps:315/1074 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 TNE----MQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVLPVQNHTIKKLLLIF 79
            ||:    .:||.:|.......:.|.:|:||..:..|:....|...::. .:...|..:|||:.::
Human     9 TNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVN-CMQTDNLELKKLVYLY 72

  Fly    80 WEIVPKTSADGKLLQEMILVCDAYRKDLQHPNEFLRGSTLRFLCKLKEPELLEPLMPAIRACLDH 144
            .....|:..|     ..|:..:::.||.:.||..:|...:|.:..::..::.|.|...:|.||..
Human    73 LMNYAKSQPD-----MAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKD 132

  Fly   145 RHSYVRRNAVLAIFTIYKNFDWLVPDGPELIASFLDTQQDMSCKRNAFLMLLHADQERALNYLAS 209
            ...|||:.|.:.:..::.....:|.|     ..|||:.:|:....|..::   |:...||    |
Human   133 EDPYVRKTAAVCVAKLHDINAQMVED-----QGFLDSLRDLIADSNPMVV---ANAVAAL----S 185

  Fly   210 CIDQVHTFGDILQLVIVELIYKVCHANPAERSRFIRCIYN--------LLNSSSN---------- 256
            .|.:.|...::|.|            ||...::.:..:..        :|:..||          
Human   186 EISESHPNSNLLDL------------NPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ 238

  Fly   257 ------AVRYESAGTLITLSLAPTAIKAAASCYIELVVKESD----------------------- 292
                  ..|...|.:.:.||.....:|     ::||:.|:||                       
Human   239 SICERVTPRLSHANSAVVLSAVKVLMK-----FLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEV 298

  Fly   293 -----NNVKLIVLDRLVAMKEHEGMEKVMQDLVMDVLRVLAAPDIEVRRKTLALALDLVYSRNIG 352
                 .|:.|||..|...:|:.           :.|..|.....|.|:.:.|.:.:.|....||.
Human   299 QYVALRNINLIVQKRPEILKQE-----------IKVFFVKYNDPIYVKLEKLDIMIRLASQANIA 352

  Fly   353 EMVLVLKKEVAKTHNVEHEDTGKYRQLLVRTLHTCSIKFPDVAANVIPVLVEFLSDTNELAAADV 417
            : ||...||.|...:|:      :.:..||.:..|:||....|...:..|::.:.........:.
Human   353 Q-VLAELKEYATEVDVD------FVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEA 410

  Fly   418 LIFIREAIQKFPALRALIIEHLIEAFPQIKSSKIHRAAVWILGEYVE----GSQILEVI------ 472
            ::.||:..:|:|.....||..|.|....:.......|.:||:|||.|    ..::||..      
Human   411 IVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHD 475

  Fly   473 --AVIQQTLGEVPMVEAEQRRLAGDQTEEQKQQQGSAGGNAAGSAAEGSGSGNASNKVTSDGTYA 535
              ..:|.|| ...:|:...::  ..:|:|..||..|.            .:.::.|....|..|.
Human   476 ESTQVQLTL-LTAIVKLFLKK--PSETQELVQQVLSL------------ATQDSDNPDLRDRGYI 525

  Fly   536 TQSAYSLAPVAKAE----KRPPLRQYLMDGDFFIGAALSATLTKLALRYAELETEARAQNRLTTQ 596
            .....|..||...|    ::|.:.:                           ||:......|...
Human   526 YWRLLSTDPVTAKEVVLSEKPLISE---------------------------ETDLIEPTLLDEL 563

  Fly   597 VMLI--MSSILHL-------GKSGFPSK--PITNDDTDR----IFVCLRTLSERTPEAI------ 640
            :..|  ::|:.|.       |..|...|  ||.:..||.    :.....|..|: |:.|      
Human   564 ICHIGSLASVYHKPPNAFVEGSHGIHRKHLPIHHGSTDAGDSPVGTTTATNLEQ-PQVIPSQGDL 627

  Fly   641 ------------------SVFTLYCREALGKMLDAQHDED------------QRMLKEKQKATAK 675
                              |...:...:.||..||:....|            |..:.....||..
Human   628 LGDLLNLDLGPPVNVPQVSSMQMGAVDLLGGGLDSLLGSDLGGGIGGSPAVGQSFIPSSVPATFA 692

  Fly   676 VQPDDPVLFA------QLSNGRDNQLGENVFESSLNQALAGSKNAQLS--------DVASPNSKL 726
            ..|...|:.:      :||.|.....|..|...::......:|..::|        .:....:..
Human   693 PSPTPAVVSSGLNDLFELSTGIGMAPGGYVAPKAVWLPAVKAKGLEISGTFTHRQGHIYMEMNFT 757

  Fly   727 NKVTQ-LTGFSDPVYAEAYVNVNQYDIVLDV-------LIVNQTNDTLQNCTLELATLGDLKLVE 783
            ||..| :|.|:      ...|.|.:.::...       |:.||:.|.    :|.|.|||.:..:|
Human   758 NKALQHMTDFA------IQFNKNSFGVIPSTPLAIHTPLMPNQSIDV----SLPLNTLGPVMKME 812

  Fly   784 RPHPVVLAPHDFCNIKAN----VKVSSTENGIIFGNIVYETALNTNVVVLNTIHIDIMDYIIPAS 844
                    |.:...:|:.    :..|..||..|....:........|.|.|.|.:.....:||.:
Human   813 --------PLNNLQVKSKENNWMDTSGRENANIMEKGIQAPFKVRKVAVKNNIDVFYFSCLIPLN 869

  Fly   845 CTDTE--------FRQMWQDFEWENKV------------TVNTSFTDLHEY------------LK 877
            ....|        |...|:|...||::            ||::...:.:.|            |.
Human   870 VLFVEDGKMERQVFLATWKDIPNENELQFQIKECHLNADTVSSKLQNNNVYTIAKRNVEGQDMLY 934

  Fly   878 HLLKSTN--------------------MKCLTPE 891
            ..||.||                    :||..||
Human   935 QSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPE 968

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaCOPNP_523400.1 Adaptin_N 17..562 CDD:279882 124/614 (20%)
Coatamer_beta_C 678..820 CDD:285019 32/167 (19%)
Coatomer_b_Cpla 826..953 CDD:291472 24/118 (20%)
AP2B1XP_011522750.1 Adaptin_N 11..534 CDD:307641 118/590 (20%)
HEAT repeat 51..75 CDD:293787 4/24 (17%)
HEAT repeat 87..114 CDD:293787 6/26 (23%)
HEAT repeat 121..151 CDD:293787 8/29 (28%)
HEAT repeat 160..186 CDD:293787 8/32 (25%)
HEAT repeat 197..228 CDD:293787 5/42 (12%)
HEAT repeat 392..416 CDD:293787 2/23 (9%)
HEAT repeat 428..457 CDD:293787 10/28 (36%)
HEAT repeat 464..494 CDD:293787 6/30 (20%)
HEAT repeat 505..541 CDD:293787 9/47 (19%)
Alpha_adaptinC2 731..825 CDD:197886 21/111 (19%)
B2-adapt-app_C 872..982 CDD:198088 18/97 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5096
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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