DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment betaCOP and copb1

DIOPT Version :9

Sequence 1:NP_523400.1 Gene:betaCOP / 32820 FlyBaseID:FBgn0008635 Length:964 Species:Drosophila melanogaster
Sequence 2:NP_001135674.1 Gene:copb1 / 100216235 XenbaseID:XB-GENE-975104 Length:953 Species:Xenopus tropicalis


Alignment Length:964 Identity:652/964 - (67%)
Similarity:778/964 - (80%) Gaps:30/964 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CYTIINSP-DLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVLPVQNH 70
            |||:||.| |.|..:|:.||.||||||...|.|.||:||.::||||:.|||:|||||||||:|:|
 Frog     8 CYTLINVPMDSEPPSEIILKADLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDH 72

  Fly    71 TIKKLLLIFWEIVPKTSADGKLLQEMILVCDAYRKDLQHPNEFLRGSTLRFLCKLKEPELLEPLM 135
            |||||||:||||||||:.|||||||||||||||||||||||||:|||||||||||||.|||||||
 Frog    73 TIKKLLLVFWEIVPKTTPDGKLLQEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLM 137

  Fly   136 PAIRACLDHRHSYVRRNAVLAIFTIYKNFDWLVPDGPELIASFLDTQQDMSCKRNAFLMLLHADQ 200
            |||||||:||||||||||||||:|||:||:.|:||.||||..||..::|.|||||||:||:||||
 Frog   138 PAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDFLVNEKDASCKRNAFMMLIHADQ 202

  Fly   201 ERALNYLASCIDQVHTFGDILQLVIVELIYKVCHANPAERSRFIRCIYNLLNSSSNAVRYESAGT 265
            :|||:||::|||||.||||||||||||||||||||||:||:||||||||||.|||.||:||:|||
 Frog   203 DRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPSERARFIRCIYNLLQSSSPAVKYEAAGT 267

  Fly   266 LITLSLAPTAIKAAASCYIELVVKESDNNVKLIVLDRLVAMKEHEGMEKVMQDLVMDVLRVLAAP 330
            |:|||.|||||||||.|||:|::||||||||||||||||.:|:|...|:|:||||||:||||:.|
 Frog   268 LVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLIVLDRLVELKDHPSHERVLQDLVMDILRVLSTP 332

  Fly   331 DIEVRRKTLALALDLVYSRNIGEMVLVLKKEVAKTHNV-EHEDTGKYRQLLVRTLHTCSIKFPDV 394
            |:|||:|||.|||:||.|||:.|:|:||||||.||:|| |||||.|||||||||||:||::|||:
 Frog   333 DLEVRKKTLQLALELVSSRNVEELVIVLKKEVIKTNNVTEHEDTDKYRQLLVRTLHSCSVRFPDM 397

  Fly   395 AANVIPVLVEFLSDTNELAAADVLIFIREAIQKFPALRALIIEHLIEAFPQIKSSKIHRAAVWIL 459
            ||||||||:|||||:||.||||||.|:|||:|:|..||.||:|.::|.|..|||.||:|||:|||
 Frog   398 AANVIPVLMEFLSDSNEAAAADVLEFVREAVQRFDNLRPLIVEKMLEVFHAIKSVKIYRAALWIL 462

  Fly   460 GEYVEGSQ-ILEVIAVIQQTLGEVPMVEAEQRRLAGDQTEEQKQQQGSAGGNAAGSAAEGSGSGN 523
            |||....: |..|:..::::|||||:||.|.::.:|:...|                 |....|.
 Frog   463 GEYCSTKEDINSVMTEVRRSLGEVPIVETELKKESGELKPE-----------------EDVTVGP 510

  Fly   524 ASNKVTSDGTYATQSAYSLA-PVAKAEKRPPLRQYLMDGDFFIGAALSATLTKLALRYAELETEA 587
            ....||..|||.||||.|.: |..|.|:|||||.:|:||||::.|:|:.||||:||||..|..|.
 Frog   511 TQKLVTEMGTYPTQSALSSSRPAKKEEERPPLRGFLLDGDFYVAASLATTLTKIALRYVALVQEK 575

  Fly   588 RAQNRLTTQVMLIMSSILHLGKSGFPSKPITNDDTDRIFVCLRTLSERTPEAISVFTLYCREALG 652
            |.||....:.||:|::|||||||..|.||||:||.|||.:||:.|||.:|....:|...||::|.
 Frog   576 RKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNEIFNKECRQSLS 640

  Fly   653 KMLDAQHDEDQ-RMLKEKQKATAKVQPDDPVLFAQLSNGRDNQLGENVFESSLNQALAGSKNAQL 716
            .||.|:.:|:: ...||.:|....||||||:.|.||:...:....|:.|:.||   ||.....|.
 Frog   641 HMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAKNETASKEDQFQLSL---LAAMGTTQR 702

  Fly   717 SDVASP-NSKLNKVTQLTGFSDPVYAEAYVNVNQYDIVLDVLIVNQTNDTLQNCTLELATLGDLK 780
            .:.|.| .||||||||||||||||||||||:|||||||||||:||||.||||:||||||||||||
 Frog   703 KEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTGDTLQSCTLELATLGDLK 767

  Fly   781 LVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNIVYE---TALNTNVVVLNTIHIDIMDYIIP 842
            |||:|.|:.||||||.||||||||:|||||||||||||:   .|.:.|.|||:.|||||||||.|
 Frog   768 LVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQP 832

  Fly   843 ASCTDTEFRQMWQDFEWENKVTVNTSFTDLHEYLKHLLKSTNMKCLTPEKALSGQCGFMAANMYA 907
            ||||||||||||.:|||||||||||:.|||:|||:|:|||||||||||||||||.|||||||:||
 Frog   833 ASCTDTEFRQMWAEFEWENKVTVNTNITDLNEYLQHILKSTNMKCLTPEKALSGYCGFMAANLYA 897

  Fly   908 KSIFGENALANLSIEKPVD-DPDSKVTGHIRIRAKSQGMALSLGDKISSSQKQS 960
            :|||||:||||:|||||:. .|::.||||||||||||||||||||||:.|||:|
 Frog   898 RSIFGEDALANVSIEKPIHLGPEAPVTGHIRIRAKSQGMALSLGDKINLSQKKS 951

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaCOPNP_523400.1 Adaptin_N 17..562 CDD:279882 375/547 (69%)
Coatamer_beta_C 678..820 CDD:285019 101/145 (70%)
Coatomer_b_Cpla 826..953 CDD:291472 104/127 (82%)
copb1NP_001135674.1 Adaptin_N 26..550 CDD:279882 373/540 (69%)
HEAT repeat 137..161 CDD:293787 22/23 (96%)
HEAT repeat 173..211 CDD:293787 25/37 (68%)
HEAT repeat 221..272 CDD:293787 43/50 (86%)
HEAT repeat 280..307 CDD:293787 22/26 (85%)
HEAT repeat 318..342 CDD:293787 17/23 (74%)
Coatamer_beta_C 667..807 CDD:285019 101/142 (71%)
Coatomer_b_Cpla 816..944 CDD:291472 104/127 (82%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 708 1.000 Domainoid score I121
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5664
Inparanoid 1 1.050 1263 1.000 Inparanoid score I172
OMA 1 1.010 - - QHG54031
OrthoDB 1 1.010 - - D117726at33208
OrthoFinder 1 1.000 - - FOG0004277
OrthoInspector 1 1.000 - - oto103367
Panther 1 1.100 - - LDO PTHR10635
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R227
SonicParanoid 1 1.000 - - X3011
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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