DRSC/TRiP Functional Genomics Resources

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Protein Alignment Frq2 and rcvrnb

DIOPT Version :9

Sequence 1:NP_001259675.1 Gene:Frq2 / 32799 FlyBaseID:FBgn0083228 Length:187 Species:Drosophila melanogaster
Sequence 2:NP_001304684.1 Gene:rcvrnb / 792903 ZFINID:ZDB-GENE-120815-1 Length:203 Species:Danio rerio


Alignment Length:187 Identity:78/187 - (41%)
Similarity:121/187 - (64%) Gaps:7/187 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MG-KKNSKLKQDTIDRLTTDTYFTEKEIRQWHKGFLKDCPNGLLTEQGFIKIYKQFFPDGDPSKF 64
            || .::|.|.:|.:..|.|.|.::::::..|::.||.:||.|.::.:.|..||..||||.||..:
Zfish     1 MGNSRSSALSRDVLQELQTSTTYSQEQLFSWYQKFLNECPTGRISREQFQSIYASFFPDADPGAY 65

  Fly    65 ASLVFRVFDENNDGAIEFEEFIRALSITSRGNLDEKLHWAFRLYDVDNDGYITREEMYNIVDAIY 129
            |..|||.||.::||.::|:|:|.||.:||.|...|||.|||.|||||.:|.||:.|::.||.:|:
Zfish    66 AQHVFRSFDADSDGTLDFKEYIVALHLTSSGKTVEKLEWAFALYDVDRNGSITKNEIHEIVKSIF 130

  Fly   130 QMVGQQPQ---TEDENTPQKRVDKIFDQMDKNHDDRLTLEEFREG---SKADPRIVQ 180
            .|:.::.|   .:|||||:||.|||:|...|..:.::|..||.:|   :|...|::|
Zfish   131 NMISKEDQKNLPDDENTPEKRTDKIWDFFGKKENGKITEGEFIQGVMDNKHILRLIQ 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Frq2NP_001259675.1 FRQ1 9..178 CDD:227455 72/174 (41%)
rcvrnbNP_001304684.1 FRQ1 10..182 CDD:227455 72/171 (42%)
EFh 65..127 CDD:238008 32/61 (52%)
EFh 101..177 CDD:238008 35/75 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D495747at33208
OrthoFinder 1 1.000 - - FOG0000038
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X31
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.920

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