DRSC/TRiP Functional Genomics Resources

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Protein Alignment Frq2 and rcvrn.2

DIOPT Version :9

Sequence 1:NP_001259675.1 Gene:Frq2 / 32799 FlyBaseID:FBgn0083228 Length:187 Species:Drosophila melanogaster
Sequence 2:NP_001008164.1 Gene:rcvrn.2 / 493526 XenbaseID:XB-GENE-5807318 Length:193 Species:Xenopus tropicalis


Alignment Length:186 Identity:73/186 - (39%)
Similarity:114/186 - (61%) Gaps:4/186 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGK-KNSKLKQDTIDRLTTDTYFTEKEIRQWHKGFLKDCPNGLLTEQGFIKIYKQFFPDGDPSKF 64
            ||. |:..|.::.::.|..:|.:::.|:.:|::.|.|..|||.:|...|.|||..|||:.||..:
 Frog     1 MGNTKSGALSKEVLEDLKANTRYSDDELCKWYESFSKQSPNGKITRTEFEKIYANFFPNSDPKSY 65

  Fly    65 ASLVFRVFDENNDGAIEFEEFIRALSITSRGNLDEKLHWAFRLYDVDNDGYITREEMYNIVDAIY 129
            |..|||.||.|.||.::|.|:|.||.:||.|....||.|||.|:|||.:|.|::.|:..|:.||:
 Frog    66 ARHVFRSFDTNEDGTLDFREYIIALHLTSSGKTSLKLEWAFSLFDVDKNGEISKVEVLEIITAIF 130

  Fly   130 QMVGQQPQ---TEDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQAL 182
            :|:..:.|   .:||||||||.||::....|:.|.::...||.:|...:..|::.:
 Frog   131 KMIPPEEQKNLADDENTPQKRADKLWAYFKKSDDAKIAEGEFIQGIMMNDEIMRLI 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Frq2NP_001259675.1 FRQ1 9..178 CDD:227455 68/171 (40%)
rcvrn.2NP_001008164.1 FRQ1 14..177 CDD:227455 68/162 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D495747at33208
OrthoFinder 1 1.000 - - FOG0000038
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X31
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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