DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP16F and RGD1

DIOPT Version :10

Sequence 1:NP_001285400.1 Gene:RhoGAP16F / 32790 FlyBaseID:FBgn0030893 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_009819.1 Gene:RGD1 / 852563 SGDID:S000000464 Length:666 Species:Saccharomyces cerevisiae


Alignment Length:419 Identity:84/419 - (20%)
Similarity:150/419 - (35%) Gaps:98/419 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 GKQDTGRPEAVVLLRELKTRPNKLALLKSSSSKDLTRLFLDDSTNTAVLVSNTSIDVC--SSNSS 150
            |:::...|:..|       .|::.::.|...|......||..|:|||. |.|.:::..  |.|::
Yeast   331 GQKNKSPPKFAV-------DPSRNSIPKRMISTHNESPFLSSSSNTAA-VPNANLNSATPSLNTN 387

  Fly   151 SGGSPAVGRSKSGRDRRNGLECCSSCSKRWHDLKQRMHTLEQDLLVQTTYSQELEQKVGEMSRQL 215
            ....|.:..|.|......|....||                ..:...||.|.......|..|.|:
Yeast   388 KQLPPTMASSISSTSNAAGAMSPSS----------------SIVTSDTTSSITKTLDPGNNSPQI 436

  Fly   216 -TELLQERDRERDKDKARFAAAGGVAAPGKRTAHGSPNVRPSRLVAWMNLSNWFKSRPSVETLRE 279
             .||:...|.:|.                               ::.:..:|  ...|.|     
Yeast   437 PEELINSLDSDRP-------------------------------ISHIQTNN--NMPPGV----- 463

  Fly   280 QRIFFDEPCFDTELEMVLKHDQHRTVPRIVVDCCDLIEQKYRRSTQPIEGIYRQCGDYNKIQTLR 344
            |:.|   ..|...||.:::.:|. .||.||..|..:|: |:....   |||||:..:...:..|:
Yeast   464 QKNF---KTFGVPLESLIEFEQD-MVPAIVRQCIYVID-KFGLDQ---EGIYRKSANVLDVSKLK 520

  Fly   345 FSIDANDYD------SLRQPDVDIHTLTGVLKLFLREIKS---PLVRVNEAKTFIGQPNQWLLTD 400
            ..||.:..:      |....|.||:.:..:||.|...:..   |....:|.|..:      .:.|
Yeast   521 EEIDKDPANISMILPSKPHSDSDIYLVGSLLKTFFASLPDSVLPKALSSEIKVCL------QIED 579

  Fly   401 LSAKLDSLKRLIRSLPESNRDTMDYIFGHFNRITKVPLQ-QISAETLSISVTPSIFHTVPQGVHM 464
            .:.:.:.:..||.:||::...|:..:..|..|:.....| :::...|.|...|:|....|...:.
Yeast   580 PTTRKNFMHGLIYNLPDAQYWTLRALVFHLKRVLAHEAQNRMNLRALCIIWGPTIAPANPDDAND 644

  Fly   465 QDIQQLLREGETLADCVKLMIEYQGRIFD 493
            .:.|.:..|         :::|...:.|:
Yeast   645 VNFQIMAME---------VLLEVSDQAFE 664

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP16FNP_001285400.1 RhoGAP 306..487 CDD:238090 40/190 (21%)
RGD1NP_009819.1 F-BAR_Rgd1 39..268 CDD:153336
RhoGAP_fRGD1 470..663 CDD:239863 46/212 (22%)
Blue background indicates that the domain is not in the aligned region.

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