DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP16F and Arhgap12

DIOPT Version :9

Sequence 1:NP_001285400.1 Gene:RhoGAP16F / 32790 FlyBaseID:FBgn0030893 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_006526377.1 Gene:Arhgap12 / 75415 MGIID:1922665 Length:843 Species:Mus musculus


Alignment Length:611 Identity:136/611 - (22%)
Similarity:221/611 - (36%) Gaps:192/611 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TTSQRPVTPGTPDSAHIVIGAAGFVAHERRQPGKTLMN----CFRDRSTTSSSSSQ--------A 56
            ||.:|...|  |..|..|..:..|.:...::|..:..|    ||      |.|.||        :
Mouse   285 TTQERTWKP--PRWARDVSTSRDFQSPGEQEPLSSEENYHSSCF------SQSDSQCGSPPRGWS 341

  Fly    57 QHAYVRGHSVTSS-----------------------------TLFRLEGSGGSNCTLDKAGKQDT 92
            :....|||::.:|                             .|.:...|......:.|:...|.
Mouse   342 EELDERGHTLYTSDYTKEKWLKHVDDQGRQYYYSADGSRSEWELPKYNASSQQQREIIKSRSLDR 406

  Fly    93 GRPEAVVLLRELKTRPNKLALLKSSSSKDLTRLFLDDSTNTAVLVSNTSIDVCSSNSSSGGSPAV 157
            ...|.:||   .|.|.:.:.|  .|:.||      ..:|....|..|.|....|.:....|| ..
Mouse   407 RLQEPIVL---TKWRHSTIVL--DSNDKD------SPTTTKLCLPENESPPTSSKHQDPAGS-LK 459

  Fly   158 GRSKSG------------RDRRNGL---------------------------------------- 170
            |:.|.|            :.|:|.|                                        
Mouse   460 GQEKYGLLNVTKITENGKKVRKNWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDLKGA 524

  Fly   171 --ECCS---SCSKRWHDLKQRMHTLEQDLLVQT-----------TYSQELEQKVGEMSRQLTEL- 218
              |..|   |..|...:||.|..|   :||:|:           ..|..:..:|.|......|. 
Mouse   525 VIEMASKDKSSKKNVFELKTRQGT---ELLIQSDNDAVINDWFKVLSSTINNQVAEADEAAEEET 586

  Fly   219 -----LQERDRERDKDKARFAAAGGVAAPGKRTAHGSPNVRPSRLVAWMNLSNWFKSRPSVETLR 278
                 :::.|:|:|:.:.:          ..|:..||......:.....||..:...||:::.:|
Mouse   587 PDSPGVEKHDKEKDQKELK----------KLRSMKGSSMDSSEQKKTKKNLKKFLTRRPTLQAVR 641

  Fly   279 EQRIFFDEPCFDTELEMVLKHDQHRTVPRIVVDCCDLIEQKYRRSTQPIEGIYRQCGDYNKIQTL 343
            |:....|: .|.:.|..:.:. ::.|||:.|..|.:.:|:    ....::||||..|:...||.|
Mouse   642 EKGYIKDQ-VFGSNLANLCQR-ENGTVPKFVKLCIEHVEE----HGLDVDGIYRVSGNLAVIQKL 700

  Fly   344 RFSIDANDYDSLRQPD-VDIHTLTGVLKLFLREIKSPLVRVNEAKTFIG----QPNQWLLTDLSA 403
            ||:::.::...|.... .|||.:||.||:|.||:..||...|....|:.    :|.|        
Mouse   701 RFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVNAIKQEPRQ-------- 757

  Fly   404 KLDSLKRLIRSLPESNRDTMDYIFGHFNRI------TKVPLQQIS-----------AETLSISVT 451
            ::.::|.|||.||:.|:|||..:|.|..|:      .::..|.|:           .||.:|:| 
Mouse   758 RVTAVKDLIRQLPKPNQDTMQILFRHLKRVIENGEKNRMTYQSIAIVFGPTLLKPERETGNIAV- 821

  Fly   452 PSIFHTVPQGVHMQDIQQLLREGETL 477
                |||.|.   |.::.:|.|..|:
Mouse   822 ----HTVYQN---QIVELILLELSTV 840

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP16FNP_001285400.1 RhoGAP 306..487 CDD:238090 58/194 (30%)
Arhgap12XP_006526377.1 SH3_ARHGAP12 13..72 CDD:213003
SH3-WW_linker 69..264 CDD:374675
PRP40 257..>409 CDD:227435 24/131 (18%)
WW 266..296 CDD:238122 5/12 (42%)
PH_ARHGAP9-like 462..573 CDD:270053 17/113 (15%)
RhoGAP_ARHGAP27_15_12_9 651..836 CDD:239868 60/205 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847082
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1450
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000816
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23176
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1079
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.930

Return to query results.
Submit another query.