DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP16F and arhgap12b

DIOPT Version :9

Sequence 1:NP_001285400.1 Gene:RhoGAP16F / 32790 FlyBaseID:FBgn0030893 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_021335715.1 Gene:arhgap12b / 393848 ZFINID:ZDB-GENE-040426-1727 Length:882 Species:Danio rerio


Alignment Length:527 Identity:117/527 - (22%)
Similarity:205/527 - (38%) Gaps:136/527 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PVTPGTPDSAHIVIGAAGFVAHERRQPGKTLMNCFRDRSTTSSSSSQAQHAYVRGHSVTSSTLFR 73
            |..|.||.....|:.......|     ||.:...:....|....||.   .:.:|..        
Zfish   451 PKHPSTPSEKCGVLNVTKITEH-----GKKVRKNWASTWTVLQGSSL---LFAKGQG-------- 499

  Fly    74 LEGSGGSNCTLDKAGKQDTGRPEAVVLL-----RELKTRPNKLALLKSSSSKDLTRLFLDDSTNT 133
             .|:..|.|       .:...||.::.|     |.:|.||                         
Zfish   500 -SGTSWSYC-------HNGSFPELLLSLLSNWKRSIKPRP------------------------- 531

  Fly   134 AVLVSNTSIDVC--SSNSSSGGSPAVGRSKSGRDRRNG-LECCS---SCSKRWHDLKQRMHTLEQ 192
              .||.|.   |  :..||.||:.:  :.:...|.|.| :|..|   |..|...:||.|:.|   
Zfish   532 --AVSYTH---CRRARASSFGGNQS--KPEFTVDLRGGSVEWASKEKSSKKHVIELKTRVGT--- 586

  Fly   193 DLLVQTTYSQELEQKVGEMSRQLTELL---------------------QERDRE---RDKDKARF 233
            :||:|:    |::..:.:..|.|:|.:                     ::.|:|   ||..|.|.
Zfish   587 ELLIQS----EIDSVINDWFRALSETINTHAWESDEAIEEDMPESPGSEKHDKEKDPRDSKKNRV 647

  Fly   234 AAAGGVAAPGKRTAHGSPNVRPSRLVAWMNLSNWFKSRPSVETLREQRIFFDEPCFDTELEMVLK 298
            .         |.::..|...:.:|    :.|..:...||:::.:|::....|: .|...|..:.:
Zfish   648 V---------KNSSMESSEQKKTR----VKLKKFLTRRPTLQAVRDKGYIKDQ-VFGCSLTALCQ 698

  Fly   299 HDQHRTVPRIVVDCCDLIEQKYRRSTQPIEGIYRQCGDYNKIQTLRFSIDANDYDSLRQPD-VDI 362
            . :..:||..|..|.:.:|    .:...::|:||..|:...||.|||:::.::..:|.... .||
Zfish   699 R-EGTSVPNFVKMCIEHVE----NTGLNVDGLYRVSGNLAVIQKLRFAVNHDEKVNLDDSKWEDI 758

  Fly   363 HTLTGVLKLFLREIKSPLVRVNEAKTFIGQPNQWLLTDLSAKLDSLKRLIRSLPESNRDTMDYIF 427
            |..||.||:..||:..||........|:.....   :|...::.|:|.||:.||:.|::||..:|
Zfish   759 HVTTGALKMLFRELPEPLFTYASFNDFVEAIKN---SDYKQRVQSIKDLIKQLPKPNQETMKVLF 820

  Fly   428 GHFNR-ITKVPLQQISAETLSISVTPSI----FHTVPQGVHMQDIQQLLREGETLADCVKLMIEY 487
            .|..| |....:.:::.::::|...|::    ..|....|||....|::.         .:::||
Zfish   821 KHLKRVIDHGEVNRMTTQSVAIVFGPTLLRPEIETGNMAVHMVYQNQIVE---------LILLEY 876

  Fly   488 QGRIFDR 494
            : .||.|
Zfish   877 E-NIFGR 882

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP16FNP_001285400.1 RhoGAP 306..487 CDD:238090 47/186 (25%)
arhgap12bXP_021335715.1 SH3_ARHGAP12 17..76 CDD:213003
SH3-WW_linker 73..267 CDD:318759
WW 271..297 CDD:306827
WW 364..389 CDD:306827
PH_ARHGAP9-like 459..611 CDD:270053 44/214 (21%)
RhoGAP_ARHGAP27_15_12_9 689..875 CDD:239868 50/202 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592296
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1450
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000816
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23176
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1079
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.840

Return to query results.
Submit another query.