DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP16F and rga2

DIOPT Version :10

Sequence 1:NP_001285400.1 Gene:RhoGAP16F / 32790 FlyBaseID:FBgn0030893 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_594152.2 Gene:rga2 / 2542682 PomBaseID:SPAC26A3.09C Length:1229 Species:Schizosaccharomyces pombe


Alignment Length:429 Identity:93/429 - (21%)
Similarity:163/429 - (37%) Gaps:115/429 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 GKQDTGRP--EAVVLLRELKTRPNKLALLKSSSSKDLTRLFLDDSTNTAVLVSNTSIDVCSSNSS 150
            ||.|: ||  :..:|.:::.:.|:  .:|..|.:   ...:.|||     ||||.::        
pombe   825 GKADS-RPVSQEAILSQDISSSPS--PVLPPSEN---VASYADDS-----LVSNLTM-------- 870

  Fly   151 SGGSPAVGRSKSGRDRRNGLECCSSCSKRWHDLKQRMHTLEQDL-------LVQTTYSQELEQK- 207
               ||.:         |:.:|.....:.|..::..|:..|..|.       :..|..:|:..:| 
pombe   871 ---SPKL---------RDSMEQVPLENHREFEISDRVSELSFDSSTGSVLEIADTRRNQDAPEKH 923

  Fly   208 -----------VGEMSRQLT--ELL-----QERDRERDKDKARFAAAGGVAAPGKRTAHGSPNVR 254
                       ..|.:.|.|  |||     |....|..:.:.:|.|.         ..|.:.|..
pombe   924 VPVIEIQSSRPSLEKTDQSTPVELLIDSHSQNSQNEEKRSRMKFWAF---------PHHKAENYE 979

  Fly   255 PSRLVAWMNLSNWFKSRPSVETLREQRIFFDEPCFDTELEMVLKHDQHRT--------------- 304
            .   ::..|:       |.:||    .:.. .|...|..|.:.||...::               
pombe   980 Q---ISDTNI-------PVIET----NVML-SPSSTTSAEPLQKHIVRKSGIFGLPLNEAVNIST 1029

  Fly   305 ------VPRIVVDCCDLIEQKYRRSTQPIEGIYRQCGDYNKIQTLRFSIDAN-DYDSL-RQPDVD 361
                  :|.:|..|.:.:|.   ...:..|||||..|..:.|:.|:...:.. |||.| ...:.|
pombe  1030 QFNDSGLPIVVYRCIEYLES---CRAEKEEGIYRLSGSASTIKHLKEQFNEGVDYDLLSSDEEFD 1091

  Fly   362 IHTLTGVLKLFLREIKSPLVRVNEAKTFIGQPNQWLLTDLSAKLDSLKRLIRSLPESNRDTMDYI 426
            :|.:.|:|||:||.:.:.|:..:..|.|...||   :.:.||.|..|..:|..||..|...:|.:
pombe  1092 VHVIAGLLKLYLRNLPTNLLDTSMHKLFELLPN---VPNDSAALGELCDVISKLPPENFALLDSL 1153

  Fly   427 FGHFNRITKV-PLQQISAETLSISVTPSIFHTVPQGVHM 464
            ..|..||... .:.:::...:.|..:|::  .:|..:.|
pombe  1154 LHHLRRIIAFEKVNKMNIRNVCIVFSPTL--NIPSDIFM 1190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP16FNP_001285400.1 RhoGAP 306..487 CDD:238090 45/162 (28%)
rga2NP_594152.2 PH-like 674..787 CDD:473070
RhoGAP_fBEM3 1016..1203 CDD:239865 45/183 (25%)
Blue background indicates that the domain is not in the aligned region.

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