DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP16F and pac-1

DIOPT Version :9

Sequence 1:NP_001285400.1 Gene:RhoGAP16F / 32790 FlyBaseID:FBgn0030893 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_498877.4 Gene:pac-1 / 176201 WormBaseID:WBGene00015418 Length:1605 Species:Caenorhabditis elegans


Alignment Length:676 Identity:135/676 - (19%)
Similarity:231/676 - (34%) Gaps:222/676 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TTTSQRPVTPGTPDSAHIVIGAAGFVAHERRQPGKTLMNCFRDRSTTSSSSSQAQHAYVRGHSVT 67
            ||||.|.:    |.|   ::|:.  ::.|.|..|.:...    .:|||:|..|...:....|...
 Worm   509 TTTSGREL----PSS---LMGST--ISMEMRSGGASSAT----TTTTSNSGQQTSRSLNAPHPPA 560

  Fly    68 SSTLFRLEGSGGSNCTLDKAGKQDTGR---------------PEAVV----LLRELKTRPNKLAL 113
            :..|.|......|:.|.|.:|:....|               |..::    :.|:...:..::||
 Worm   561 THRLQRFIALFNSSKTSDGSGEHKKSRMKRSRTSLPASRFALPGTILQRDGVARQTWVKHQEIAL 625

  Fly   114 LKSSSSKD-------LTR--LFL------DDSTNTAVLVSNTSIDVCSS---------------- 147
            .||....:       |.|  |:|      ..:..|..|.|:|.:|||::                
 Worm   626 GKSGKRNNWEDRWAVLCRRSLYLCVESPAYTTEKTIELGSHTRVDVCNAIVDIAYDWLSSSFSKQ 690

  Fly   148 -------------------------------NSSSGGSPAVGR-------SKSGRDRRNGLE--- 171
                                           .|||....|.|.       |.:||...|.:.   
 Worm   691 RHVVRIVTQNRSEHLIELNTESEMLSWISVLQSSSEDGIATGSSVDENELSTTGRHNNNAVSNSS 755

  Fly   172 ------------CCSSCS-KRWHDLKQRMHTLEQDLLVQTTYSQELEQKVGEMSRQL-------- 215
                        ..|||| ....:.....|||:|....||  :|:.:|.|.|:|..:        
 Worm   756 ALLHNSQSIASLASSSCSTATTSEFLNSQHTLQQQQQQQT--NQKHQQTVNELSAGIVSHLPTSK 818

  Fly   216 ------------TELLQER------------------DRERDKDKARF-AAAGGVAAPGKRTAHG 249
                        ||..:.|                  :::.:.|.:.. :::..:|.......|.
 Worm   819 SFGGLSTTASSTTENAKNRLIMHRYIAKNSQLQSPTANKKMETDPSTVPSSSQTMATTSSSFHHH 883

  Fly   250 SPNVRPSRLVAWMNLSN----------------WFKSRPSVE------------TLREQRIFFDE 286
            |....|||     ::.|                |.||:.:.:            :.::......:
 Worm   884 SSQAGPSR-----DIENGEAPTATATTPKSGRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQ 943

  Fly   287 PCFDTELEMVLKHDQHRTVPRIVVDCCDLIEQKYRRSTQPIEGIYRQCGDYNKIQTLRFSIDAND 351
            |.....:...........||.||..|..:|| .|...|   .||||..|:...:..|:.|:....
 Worm   944 PVLGVRIADCPTGSCEDHVPMIVQACVCVIE-TYGMDT---VGIYRIPGNTAAVNALKESLSNRG 1004

  Fly   352 YDSLRQPDV--------DIHTLTGVLKLFLREIKSPLVRVNEAKTFIGQPNQWLLTDLSAKLDSL 408
            :||:....|        |::.::.:||:|||::..||: .::...|....|:  ::....:|..|
 Worm  1005 FDSVDLSKVESLDPRWRDVNVVSSLLKMFLRKLPEPLL-TDKLYPFFIDANR--ISTHHNRLHKL 1066

  Fly   409 KRLIRSLPESNRDTMDYIFGHFNRITK-VPLQQISAETLSISVTPSIFHTVPQGV-----HMQDI 467
            :.|:|.||..:.||:.::..|.:.||| ..:.::....|::...|||.......:     ||.|.
 Worm  1067 RNLLRKLPRPHYDTLRFLIVHLSEITKHSDVNKMECRNLALMFGPSIVRPSDDNMATMVTHMSDQ 1131

  Fly   468 QQLLREGETLADCVKLMIEYQGRIFD 493
            .:::   |||       |.|...:||
 Worm  1132 CKII---ETL-------IHYNLWMFD 1147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP16FNP_001285400.1 RhoGAP 306..487 CDD:238090 51/194 (26%)
pac-1NP_498877.4 PH_ARHGAP21-like 613..728 CDD:269955 19/114 (17%)
PH 617..726 CDD:278594 17/108 (16%)
RhoGAP_ARHGAP21 945..1146 CDD:239860 53/217 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23176
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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