DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP16F and arhgap12

DIOPT Version :10

Sequence 1:NP_001285400.1 Gene:RhoGAP16F / 32790 FlyBaseID:FBgn0030893 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_004915509.1 Gene:arhgap12 / 100493129 XenbaseID:XB-GENE-961971 Length:824 Species:Xenopus tropicalis


Alignment Length:425 Identity:96/425 - (22%)
Similarity:164/425 - (38%) Gaps:122/425 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 FRLEGSGGSNCTLDKAGKQDTGRPEAVVLLRELKTRPNKLALLKSSSS---KDLTRLFLDDSTNT 133
            |.::..|.|   :|.|.|..:.:...:    ||||......|::|.|.   ||....|    .||
 Frog   492 FTVDIKGAS---VDWASKDKSSKKNVI----ELKTTSGTELLIQSDSDTVIKDWYTAF----CNT 545

  Fly   134 AVLVSNTSIDVCSSNSSSGGSPAVGRSKSGRDRRNGLECCSSCSKRWHDLKQRMHTLEQDLLVQT 198
            .........:.|..|...  ||.   .|.|:::.:                              
 Frog   546 TGTTPGDLEEACEDNVPE--SPV---DKHGKEKFD------------------------------ 575

  Fly   199 TYSQELEQKVGEMSRQLTELLQERDRERDKDKAR-FAAAGGV-AAPGKRTAHGSPNVRPSRLVAW 261
                                 :|:|.:||..|.| |..|..: .|..|:|.              
 Frog   576 ---------------------KEKDHDRDSKKNRSFKPANSIDNAEQKKTK-------------- 605

  Fly   262 MNLSNWFKSRPSVETLREQRIFFDEPCFDTELEMVLKHDQHRTVPRIVVDCCDLIEQKYRRSTQP 326
            ..|..:...||:::.:||:. :..:|.|.:.|..:.:. ::.|||..|..|.:.:|::    ...
 Frog   606 TKLKKFLTRRPTMQAVREKG-YIKDPVFGSSLASLCQR-ENTTVPNFVKMCIEHVEEQ----GLD 664

  Fly   327 IEGIYRQCGDYNKIQTLRFSI------DANDYDSLRQPDVDIHTLTGVLKLFLREIKSPLVRVNE 385
            ::|:||..|:...||.|||::      |.||     ....|||.:||.||:|.||:..||...:.
 Frog   665 VDGLYRVSGNLAVIQKLRFAVTHDEKLDLND-----SKWEDIHVITGALKMFFRELPEPLFTFSH 724

  Fly   386 AKTFIGQPNQWLLTDLSAKLDSLKRLIRSLPESNRDTMDYIFGHFNRITKV-PLQQISAETLSIS 449
            ...|:....|    :...::.::|.||:.||:.|.|||..:|.|..::.:. ...:::.::|:|.
 Frog   725 FNDFVNAIKQ----EPKLRVQAIKDLIKQLPKPNHDTMQALFKHLKKVVETGEKNRMTYQSLAIV 785

  Fly   450 VTPSI-----------FHTVPQGVHMQDIQQLLRE 473
            ..|::           .|||.|.   |.::.:|.|
 Frog   786 FGPTLLKPESETGNIAIHTVYQN---QIVELILLE 817

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP16FNP_001285400.1 RhoGAP 306..487 CDD:238090 51/186 (27%)
arhgap12XP_004915509.1 SH3 <26..72 CDD:473055
SH3-WW_linker 69..249 CDD:435468
WW 255..282 CDD:238122
WW 347..372 CDD:459800
PH_ARHGAP9-like 439..545 CDD:270053 16/63 (25%)
RhoGAP_ARHGAP27_15_12_9 632..817 CDD:239868 54/201 (27%)
Blue background indicates that the domain is not in the aligned region.

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